Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

78772787 .. 78776886

Gene Structure 4100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTTTGGGCCTAAACTCATCTCTGAGACTCACTATGCATCTCAGTCCCTACAGATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAACGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACACTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCATGGCCCTTTATGTCACCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTACAAAGTAAAATGGAAACTGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAACGCAATCAAATACAATGATGACAAAGATGATGTCCACGTGATGGCCCAAACACTGTTGGAAAAATTAGAAGAGAAGTGGCTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGCGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTCCAGAAGTGCAGAAAAATGTCTTTTGATGATAAAAGGCGACTTGGGACAGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGCGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGCTGCTGCACAAATTCCTGAAGCCATGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAGCCTGCCGTTAAAAGAACTAAAAAAATCTCCACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

382

Amino Acids

43.56

Weight (kDa)

7.71

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	114 - 197	1.7e-19	Bromodomain
BET	PF17035	271 - 334	2.7e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	930
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	3 cut(s)	101, 300, 342
AclWI	GGATC	2 cut(s)	744, 948
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	2 cut(s)	138, 1035
AcuI	CTGAAG	3 cut(s)	126, 888, 1062
AcvI	CACGTG	1 cut(s)	580
AfaI	GTAC	2 cut(s)	463, 468
AfiI	CCNNNNNNNGG	3 cut(s)	55, 228, 583
AgsI	TTSAA	6 cut(s)	331, 352, 407, 538, 647, 775
AluBI	AGCT	3 cut(s)	751, 848, 1025
AluI	AGCT	3 cut(s)	751, 848, 1025
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	744, 948
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	5 cut(s)	8, 380, 585, 729, 1017
ApeKI	GCWGC	7 cut(s)	271, 284, 302, 305, 744, 1025, 1028
ApoI	RAATTY	2 cut(s)	138, 1035
ArsI	GACNNNNNNTTYG	2 cut(s)	558, 590
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	6 cut(s)	8, 381, 454, 586, 796, 1018
AsuHPI	GGTGA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	2 cut(s)	454, 796
BalI	TGGCCA	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	1092
BbrPI	CACGTG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	7 cut(s)	283, 289, 292, 296, 756, 1012, 1015
BccI	CCATC	2 cut(s)	49, 577
BceAI	ACGGC	1 cut(s)	1100
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	50, 396
BglI	GCCNNNNNGGC	1 cut(s)	728
BglII	AGATCT	3 cut(s)	322, 778, 871
BisI	GCNGC	9 cut(s)	102, 272, 285, 300, 303, 306, 745, 1026, 1029
BlsI	GCNGC	9 cut(s)	103, 273, 286, 301, 304, 307, 746, 1027, 1030
Bme18I	GGWCC	2 cut(s)	454, 796
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	6 cut(s)	8, 381, 454, 586, 796, 1018
BmiI	GGNNCC	2 cut(s)	60, 1089
BmsI	GCATC	4 cut(s)	47, 271, 991, 1087
Bpu10I	CCTNAGC	2 cut(s)	705, 900
BpuEI	CTTGAG	2 cut(s)	182, 217
BsaAI	YACGTR	2 cut(s)	290, 580
BsaJI	CCNNGG	4 cut(s)	450, 457, 732, 1047
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 228, 583
Bse1I	ACTGG	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	450, 457, 732, 1047
BseGI	GGATG	1 cut(s)	1006
BseLI	CCNNNNNNNGG	3 cut(s)	55, 228, 583
BseMII	CTCAG	7 cut(s)	15, 56, 377, 696, 889, 914, 971
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	665, 722
BseXI	GCAGC	7 cut(s)	283, 289, 292, 296, 756, 1012, 1015
BsgI	GTGCAG	2 cut(s)	826, 1014
BshFI	GGCC	5 cut(s)	10, 382, 587, 731, 1019
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	911
BslFI	GGGAC	2 cut(s)	31, 856
BslI	CCNNNNNNNGG	3 cut(s)	55, 228, 583
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	31, 856
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	5 cut(s)	10, 382, 587, 731, 1019
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	189, 1092
Bsp143I	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
Bsp19I	CCATGG	2 cut(s)	450, 1047
BspACI	CCGC	3 cut(s)	101, 300, 342
BspANI	GGCC	5 cut(s)	10, 382, 587, 731, 1019
BspCNI	CTCAG	7 cut(s)	16, 55, 376, 697, 888, 913, 970
BspLI	GGNNCC	2 cut(s)	60, 1089
BspPI	GGATC	2 cut(s)	744, 948
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	4 cut(s)	450, 457, 732, 1047
BssMI	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
BssT1I	CCWWGG	4 cut(s)	450, 457, 732, 1047
Bst4CI	ACNGT	3 cut(s)	466, 597, 858
Bst6I	CTCTTC	2 cut(s)	606, 642
BstBAI	YACGTR	2 cut(s)	290, 580
BstC8I	GCNNGC	3 cut(s)	724, 749, 1113
BstDEI	CTNAG	8 cut(s)	24, 42, 363, 705, 740, 875, 900, 957
BstDSI	CCRYGG	2 cut(s)	450, 1047
BstF5I	GGATG	1 cut(s)	1006
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	6 cut(s)	325, 360, 739, 781, 874, 943
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 728, 1025, 1112
BstSFI	CTRYAG	2 cut(s)	50, 396
BstV1I	GCAGC	7 cut(s)	283, 289, 292, 296, 756, 1012, 1015
BstX2I	RGATCY	5 cut(s)	322, 736, 778, 871, 940
BstYI	RGATCY	5 cut(s)	322, 736, 778, 871, 940
BsuRI	GGCC	5 cut(s)	10, 382, 587, 731, 1019
BtgI	CCRYGG	2 cut(s)	450, 1047
BtsCI	GGATG	1 cut(s)	1006
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	3 cut(s)	724, 749, 1113
CfoI	GCGC	1 cut(s)	931
Cfr13I	GGNCC	6 cut(s)	8, 381, 454, 586, 796, 1018
Csp6I	GTAC	2 cut(s)	462, 467
CviAII	CATG	6 cut(s)	378, 422, 451, 694, 727, 1048
CviQI	GTAC	2 cut(s)	462, 467
DdeI	CTNAG	8 cut(s)	24, 42, 363, 705, 740, 875, 900, 957
DpnI	GATC	6 cut(s)	324, 359, 738, 780, 873, 942
DpnII	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	2 cut(s)	606, 642
EarI	CTCTTC	2 cut(s)	606, 642
Eco130I	CCWWGG	4 cut(s)	450, 457, 732, 1047
Eco24I	GRGCYC	1 cut(s)	1092
Eco47I	GGWCC	2 cut(s)	454, 796
Eco57I	CTGAAG	3 cut(s)	126, 888, 1062
Eco72I	CACGTG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	911
EcoT14I	CCWWGG	4 cut(s)	450, 457, 732, 1047
EcoT22I	ATGCAT	2 cut(s)	40, 1006
EcoT38I	GRGCYC	1 cut(s)	1092
ErhI	CCWWGG	4 cut(s)	450, 457, 732, 1047
FaeI	CATG	6 cut(s)	381, 425, 454, 697, 730, 1051
FaqI	GGGAC	2 cut(s)	31, 856
FatI	CATG	6 cut(s)	377, 421, 450, 693, 726, 1047
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	9 cut(s)	102, 272, 285, 300, 303, 306, 745, 1026, 1029
FokI	GGATG	1 cut(s)	1013
FriOI	GRGCYC	1 cut(s)	1092
Fsp4HI	GCNGC	9 cut(s)	102, 272, 285, 300, 303, 306, 745, 1026, 1029
FspBI	CTAG	1 cut(s)	87
FspI	TGCGCA	1 cut(s)	930
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	9 cut(s)	102, 272, 285, 300, 303, 306, 745, 1026, 1029
HaeIII	GGCC	5 cut(s)	10, 382, 587, 731, 1019
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	6 cut(s)	381, 425, 454, 697, 730, 1051
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HinfI	GANTC	3 cut(s)	28, 83, 125
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	3 cut(s)	175, 577, 691
Hpy188I	TCNGA	3 cut(s)	25, 960, 1096
Hpy188III	TCNNGA	9 cut(s)	87, 122, 538, 799, 866, 902, 911, 944, 1040
Hpy8I	GTNNAC	3 cut(s)	175, 577, 691
HpyCH4III	ACNGT	3 cut(s)	466, 597, 858
HpyCH4IV	ACGT	2 cut(s)	289, 579
HpyCH4V	TGCA	9 cut(s)	38, 214, 284, 308, 421, 807, 1004, 1031, 1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 728, 1025, 1112
HpyF3I	CTNAG	8 cut(s)	24, 42, 363, 705, 740, 875, 900, 957
HpySE526I	ACGT	2 cut(s)	289, 579
Hsp92II	CATG	6 cut(s)	381, 425, 454, 697, 730, 1051
HspAI	GCGC	1 cut(s)	929
Kzo9I	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
LmnI	GCTCC	2 cut(s)	58, 1087
Lsp1109I	GCAGC	7 cut(s)	283, 289, 292, 296, 756, 1012, 1015
LweI	GCATC	4 cut(s)	47, 271, 991, 1087
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	289, 579
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	6 cut(s)	324, 359, 738, 780, 873, 942
MboI	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
MboII	GAAGA	4 cut(s)	340, 623, 659, 881
MflI	RGATCY	5 cut(s)	322, 736, 778, 871, 940
MhlI	GDGCHC	2 cut(s)	189, 1092
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	3 cut(s)	138, 605, 1035
MluNI	TGGCCA	1 cut(s)	731
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	2 cut(s)	40, 1006
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	7 cut(s)	153, 255, 264, 983, 1007, 1014, 1119
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	305, 728, 1025, 1112
NcoI	CCATGG	2 cut(s)	450, 1047
NdeII	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
NlaIII	CATG	6 cut(s)	381, 425, 454, 697, 730, 1051
NlaIV	GGNNCC	2 cut(s)	60, 1089
NmuCI	GTSAC	1 cut(s)	390
NsbI	TGCGCA	1 cut(s)	930
NsiI	ATGCAT	2 cut(s)	40, 1006
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	83, 125
PflMI	CCANNNNNTGG	1 cut(s)	583
PkrI	GCNGC	9 cut(s)	103, 273, 286, 301, 304, 307, 746, 1027, 1030
PleI	GAGTC	1 cut(s)	22
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	2 cut(s)	290, 580
PspCI	CACGTG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	60, 1089
PspPI	GGNCC	6 cut(s)	8, 381, 454, 586, 796, 1018
PsuI	RGATCY	5 cut(s)	322, 736, 778, 871, 940
RsaI	GTAC	2 cut(s)	463, 468
RsaNI	GTAC	2 cut(s)	462, 467
SaqAI	TTAA	7 cut(s)	153, 255, 264, 983, 1007, 1014, 1119
SatI	GCNGC	9 cut(s)	102, 272, 285, 300, 303, 306, 745, 1026, 1029
Sau3AI	GATC	6 cut(s)	322, 357, 736, 778, 871, 940
Sau96I	GGNCC	6 cut(s)	8, 381, 454, 586, 796, 1018
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	189, 1092
SfaNI	GCATC	4 cut(s)	47, 271, 991, 1087
SfcI	CTRYAG	2 cut(s)	50, 396
SinI	GGWCC	2 cut(s)	454, 796
SmlI	CTYRAG	2 cut(s)	161, 196
SmoI	CTYRAG	2 cut(s)	161, 196
Sse9I	AATT	3 cut(s)	138, 605, 1035
SsiI	CCGC	3 cut(s)	101, 300, 342
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	4 cut(s)	450, 457, 732, 1047
TaaI	ACNGT	3 cut(s)	466, 597, 858
TaiI	ACGT	2 cut(s)	292, 582
TaqI	TCGA	2 cut(s)	183, 227
TasI	AATT	3 cut(s)	138, 605, 1035
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	2 cut(s)	104, 302
TfiI	GAWTC	2 cut(s)	83, 125
Tru1I	TTAA	7 cut(s)	153, 255, 264, 983, 1007, 1014, 1119
Tru9I	TTAA	7 cut(s)	153, 255, 264, 983, 1007, 1014, 1119
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	7 cut(s)	271, 284, 302, 305, 744, 1025, 1028
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	60, 150, 710
TspRI	CASTG	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	454, 796
XapI	RAATTY	2 cut(s)	138, 1035
XbaI	TCTAGA	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	2 cut(s)	40, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.