Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

41894698 .. 41897752

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTTTTGCTTCAGATGGATCAAGTGGAGGCACCAATTGTAGATGTCAGCCATGTTGGTGCTCTAGATTTTACTGGCAATGGTGTAGAAGCCGAGTCTTTCAAGCACCGTGTAGATGAAATTTTCGTTCAGGTTGACAAGCTTGAGCAGAGAGTGAATGAGATAGAGCAGTTTTACTCGAGCGCGAGTAAAAAGCAGGCGAATGCAAGTAAGAGTGGCTCAGCTGTGAAGGATAAAGAGAAGCATGTTCCGAGTATGAAGAAGCAGCAGCAAGAGGCTGCATTGAGGGAGGCAGCTGCCGCAAAGAGAATGCAAGAACTCATGCGCCAATTTGGCACCATATTGCGTCAAATTACACAACACAAGTGGGCGTGGCCCTTTTTGCAACCTGTAGATGTAGAAGGTCTTGGTTTACATGATTATTATGAGGTCATTGACAAGCCAATGGATTTCAGTACAATTAAAAATCAAATGGAGGCCAAGGATGGTACTGGGTATAAAAACGTAAGGGAGATATGTGCTGATGTGCGGTTAGTTTTCAAAAACGCGATGAAGTATAATGAGGAGAGAAGTGATGTTCATGTTATGGCCAAAACTTTGATGGCAAAATTTGAGGAAAAGTGGCTGCAGCTTCTGCCTAAAGTTACTGAAGAGGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAGTTAAATATGCAGCTTGCTGAAGAGGCTGCTCATGCTAAAATGGCTAGAGACTTGAGCAATGAGCTTTATGAGGTTGATATGCATTTGGAAGAGCTCCGAGATATGGTTGTTCAAAAGTGCAGGTTGCTTAGTAACATCTTATCTAATTATAAAGTGGTTTTCATCTACATTTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

289

Amino Acids

33.41

Weight (kDa)

5.43

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	113 - 198	6.3e-18	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
Acc36I	ACCTGC	1 cut(s)	801
AccB1I	GGYRCC	2 cut(s)	31, 335
AccII	CGCG	2 cut(s)	185, 548
AciI	CCGC	2 cut(s)	300, 529
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	2 cut(s)	120, 608
AcuI	CTGAAG	2 cut(s)	669, 729
AfaI	GTAC	2 cut(s)	457, 490
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	103, 541, 803
AluBI	AGCT	7 cut(s)	142, 224, 296, 631, 703, 754, 784
AluI	AGCT	7 cut(s)	142, 224, 296, 631, 703, 754, 784
Alw21I	GWGCWC	2 cut(s)	64, 786
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	634
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	3 cut(s)	374, 477, 588
ApeKI	GCWGC	9 cut(s)	265, 268, 278, 293, 296, 625, 628, 700, 716
ApoI	RAATTY	2 cut(s)	120, 608
AspLEI	GCGC	2 cut(s)	185, 327
AspS9I	GGNCC	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	2 cut(s)	31, 335
BanII	GRGCYC	1 cut(s)	786
Bbv12I	GWGCWC	2 cut(s)	64, 786
BbvI	GCAGC	9 cut(s)	265, 277, 280, 283, 305, 612, 640, 703, 712
BccI	CCATC	3 cut(s)	10, 479, 595
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	3 cut(s)	65, 665, 735
BfmI	CTRYAG	2 cut(s)	390, 626
BfuAI	ACCTGC	1 cut(s)	801
BglI	GCCNNNNNGGC	1 cut(s)	333
BlpI	GCTNAGC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	33, 337
BmrI	ACTGGG	1 cut(s)	501
BmuI	ACTGGG	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	2 cut(s)	164, 763
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	2 cut(s)	79, 496
Bse3DI	GCAATG	2 cut(s)	85, 754
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMI	GCAATG	2 cut(s)	85, 754
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	79, 496
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	9 cut(s)	265, 277, 280, 283, 305, 612, 640, 703, 712
BsgI	GTGCAG	1 cut(s)	829
Bsh1236I	CGCG	2 cut(s)	185, 548
BshFI	GGCC	3 cut(s)	376, 479, 590
BshNI	GGYRCC	2 cut(s)	31, 335
BsiHKAI	GWGCWC	2 cut(s)	64, 786
BsiHKCI	CYCGRG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	1 cut(s)	732
BsmI	GAATGC	2 cut(s)	208, 315
BsnI	GGCC	3 cut(s)	376, 479, 590
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	64, 786
Bsp143I	GATC	2 cut(s)	19, 864
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	300, 529
BspANI	GGCC	3 cut(s)	376, 479, 590
BspCNI	CTCAG	1 cut(s)	233
BspFNI	CGCG	2 cut(s)	185, 548
BspLI	GGNNCC	2 cut(s)	33, 337
BspMAI	CTGCAG	1 cut(s)	630
BspMI	ACCTGC	1 cut(s)	801
BspPI	GGATC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	774
BspT107I	GGYRCC	2 cut(s)	31, 335
BsrDI	GCAATG	2 cut(s)	85, 754
BsrI	ACTGG	2 cut(s)	79, 496
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	19, 864
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	110, 690
Bst6I	CTCTTC	5 cut(s)	645, 663, 669, 705, 774
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	198, 705
BstDEI	CTNAG	2 cut(s)	220, 818
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	2 cut(s)	185, 548
BstHHI	GCGC	2 cut(s)	185, 327
BstKTI	GATC	2 cut(s)	22, 867
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	2 cut(s)	19, 864
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 333, 382, 634, 713, 722, 731
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	2 cut(s)	390, 626
BstUI	CGCG	2 cut(s)	185, 548
BstV1I	GCAGC	9 cut(s)	265, 277, 280, 283, 305, 612, 640, 703, 712
BsuRI	GGCC	3 cut(s)	376, 479, 590
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	2 cut(s)	198, 705
CaiI	CAGNNNCTG	1 cut(s)	634
CfoI	GCGC	2 cut(s)	185, 327
Cfr13I	GGNCC	1 cut(s)	375
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	456, 489
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	6 cut(s)	53, 245, 322, 416, 581, 722
CviQI	GTAC	2 cut(s)	456, 489
DdeI	CTNAG	2 cut(s)	220, 818
DpnI	GATC	2 cut(s)	21, 866
DpnII	GATC	2 cut(s)	19, 864
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	5 cut(s)	645, 663, 669, 705, 774
EarI	CTCTTC	5 cut(s)	645, 663, 669, 705, 774
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	669, 729
Eco88I	CYCGRG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	6 cut(s)	56, 248, 325, 419, 584, 725
FatI	CATG	6 cut(s)	52, 244, 321, 415, 580, 721
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	786
FspBI	CTAG	3 cut(s)	65, 665, 735
GlaI	GCGC	2 cut(s)	184, 326
HaeIII	GGCC	3 cut(s)	376, 479, 590
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	2 cut(s)	185, 327
Hin1II	CATG	6 cut(s)	56, 248, 325, 419, 584, 725
Hin6I	GCGC	2 cut(s)	183, 325
HinP1I	GCGC	2 cut(s)	183, 325
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	136, 413
Hpy188I	TCNGA	3 cut(s)	15, 252, 788
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	136, 413
HpyAV	CCTTC	2 cut(s)	223, 395
HpyCH4III	ACNGT	2 cut(s)	110, 690
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	8 cut(s)	206, 281, 313, 385, 628, 700, 772, 810
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 333, 382, 634, 713, 722, 731
HpyF3I	CTNAG	2 cut(s)	220, 818
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	6 cut(s)	56, 248, 325, 419, 584, 725
HspAI	GCGC	2 cut(s)	183, 325
Kzo9I	GATC	2 cut(s)	19, 864
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	789
LpnPI	CCDG	6 cut(s)	60, 116, 182, 402, 477, 796
Lsp1109I	GCAGC	9 cut(s)	265, 277, 280, 283, 305, 612, 640, 703, 712
MaeI	CTAG	3 cut(s)	65, 665, 735
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	643, 821
MalI	GATC	2 cut(s)	21, 866
MboI	GATC	2 cut(s)	19, 864
MboII	GAAGA	6 cut(s)	271, 662, 680, 686, 722, 791
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	64, 786
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	7 cut(s)	36, 120, 329, 351, 459, 608, 835
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	462, 692
MslI	CAYNNNNRTG	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	2 cut(s)	224, 296
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	2 cut(s)	208, 315
MvnI	CGCG	2 cut(s)	185, 548
MwoI	GCNNNNNNNGC	7 cut(s)	299, 333, 382, 634, 713, 722, 731
NdeII	GATC	2 cut(s)	19, 864
NlaIII	CATG	6 cut(s)	56, 248, 325, 419, 584, 725
NlaIV	GGNNCC	2 cut(s)	33, 337
NmeAIII	GCCGAG	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	774
NspI	RCATGY	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	774
PctI	GAATGC	2 cut(s)	208, 315
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	786
PspN4I	GGNNCC	2 cut(s)	33, 337
PspPI	GGNCC	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	634
PvuII	CAGCTG	2 cut(s)	224, 296
RsaI	GTAC	2 cut(s)	457, 490
RsaNI	GTAC	2 cut(s)	456, 489
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	462, 692
Sau3AI	GATC	2 cut(s)	19, 864
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	64, 786
SfcI	CTRYAG	2 cut(s)	390, 626
Sfr274I	CTCGAG	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	143, 178, 742
SmoI	CTYRAG	3 cut(s)	143, 178, 742
Sse9I	AATT	7 cut(s)	36, 120, 329, 351, 459, 608, 835
SsiI	CCGC	2 cut(s)	300, 529
SspMI	CTAG	3 cut(s)	65, 665, 735
SstI	GAGCTC	1 cut(s)	786
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	110, 690
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	179
TasI	AATT	7 cut(s)	36, 120, 329, 351, 459, 608, 835
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	462, 692
Tru9I	TTAA	2 cut(s)	462, 692
TseI	GCWGC	9 cut(s)	265, 268, 278, 293, 296, 625, 628, 700, 716
TspDTI	ATGAA	5 cut(s)	132, 272, 566, 569, 841
XapI	RAATTY	2 cut(s)	120, 608
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XhoI	CTCGAG	1 cut(s)	178
XspI	CTAG	3 cut(s)	65, 665, 735
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.