Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

16930501 .. 16934669

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG159100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTTTGGGCCTAAATTATGGTTTCGGAAGCCCAATGACCCATTCATCTCTGAGACTCACTATGCATCTCAGTCCCTACAGTTGCAGATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACACTTTAACACCATTAAGAAGCACCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTTAAACAGATCACTCAGCACAAGTGGTCATGGCCCTTTATGTCGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTACAAAGTAAAATGGAAACCGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAACGCAATCAAATACAATGATGACAAAGATGATGTCCACGTGATGGCCCAAACACTGTTGGAAAAATTAGAAGAAAAGTGGCTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGCGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTTCAGAAGTGCAGAAAAATGTCTTTTGATGATAAAAGACGACTTGGGACAGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGCGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGCTGCTGCACAAATTCCTGAAGCCCTGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAGCCTGCCGTTAAAAGAACTAAAAAAATCTCCACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

393

Amino Acids

44.98

Weight (kDa)

8.25

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	125 - 208	1.7e-19	Bromodomain
BET	PF17035	282 - 345	2.9e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	963
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	3 cut(s)	134, 333, 375
AclWI	GGATC	2 cut(s)	777, 981
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	171, 1068
AcuI	CTGAAG	3 cut(s)	159, 921, 1095
AcvI	CACGTG	1 cut(s)	613
AfaI	GTAC	2 cut(s)	496, 501
AfiI	CCNNNNNNNGG	2 cut(s)	261, 616
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	5 cut(s)	364, 440, 571, 680, 808
AjnI	CCWGG	1 cut(s)	1080
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	784, 881, 1058
AluI	AGCT	3 cut(s)	784, 881, 1058
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	777, 981
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	5 cut(s)	8, 413, 618, 762, 1050
ApeKI	GCWGC	6 cut(s)	317, 335, 338, 777, 1058, 1061
ApoI	RAATTY	2 cut(s)	171, 1068
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
AsiGI	ACCGGT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	5 cut(s)	8, 414, 487, 619, 1051
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	1125
BbrPI	CACGTG	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	6 cut(s)	322, 325, 329, 789, 1045, 1048
BccI	CCATC	2 cut(s)	82, 610
BceAI	ACGGC	1 cut(s)	1133
BciT130I	CCWGG	1 cut(s)	1082
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	2 cut(s)	77, 429
BglI	GCCNNNNNGGC	1 cut(s)	761
BglII	AGATCT	3 cut(s)	355, 811, 904
BisI	GCNGC	8 cut(s)	135, 318, 333, 336, 339, 778, 1059, 1062
BlsI	GCNGC	8 cut(s)	136, 319, 334, 337, 340, 779, 1060, 1063
Bme1390I	CCNGG	1 cut(s)	1082
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	5 cut(s)	8, 414, 487, 619, 1051
BmiI	GGNNCC	2 cut(s)	93, 1122
BmrFI	CCNGG	1 cut(s)	1082
BmsI	GCATC	4 cut(s)	74, 304, 1024, 1120
Bpu10I	CCTNAGC	2 cut(s)	738, 933
BpuEI	CTTGAG	2 cut(s)	215, 250
BsaAI	YACGTR	2 cut(s)	323, 613
BsaJI	CCNNGG	5 cut(s)	483, 490, 765, 1080, 1081
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 616
Bse118I	RCCGGY	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	1082
BseDI	CCNNGG	5 cut(s)	483, 490, 765, 1080, 1081
BseGI	GGATG	1 cut(s)	1039
BseLI	CCNNNNNNNGG	2 cut(s)	261, 616
BseMII	CTCAG	7 cut(s)	42, 83, 410, 729, 922, 947, 1004
BseRI	GAGGAG	2 cut(s)	698, 755
BseXI	GCAGC	6 cut(s)	322, 325, 329, 789, 1045, 1048
BsgI	GTGCAG	2 cut(s)	859, 1047
BshFI	GGCC	5 cut(s)	10, 415, 620, 764, 1052
BshTI	ACCGGT	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	58, 889
BslI	CCNNNNNNNGG	2 cut(s)	261, 616
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	58, 889
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	5 cut(s)	10, 415, 620, 764, 1052
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	222, 1125
Bsp143I	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	134, 333, 375
BspANI	GGCC	5 cut(s)	10, 415, 620, 764, 1052
BspCNI	CTCAG	7 cut(s)	43, 82, 409, 730, 921, 946, 1003
BspLI	GGNNCC	2 cut(s)	93, 1122
BspPI	GGATC	2 cut(s)	777, 981
BsrFI	RCCGGY	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	5 cut(s)	483, 490, 765, 1080, 1081
BssMI	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
BssT1I	CCWWGG	3 cut(s)	483, 490, 765
Bst2UI	CCWGG	1 cut(s)	1082
Bst4CI	ACNGT	4 cut(s)	81, 499, 630, 891
Bst6I	CTCTTC	1 cut(s)	675
BstBAI	YACGTR	2 cut(s)	323, 613
BstC8I	GCNNGC	3 cut(s)	757, 782, 1146
BstDEI	CTNAG	8 cut(s)	51, 69, 396, 738, 773, 908, 933, 990
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	1039
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	6 cut(s)	358, 393, 772, 814, 907, 976
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 338, 761, 1058, 1145
BstNI	CCWGG	1 cut(s)	1082
BstSCI	CCNGG	1 cut(s)	1080
BstSFI	CTRYAG	2 cut(s)	77, 429
BstV1I	GCAGC	6 cut(s)	322, 325, 329, 789, 1045, 1048
BstX2I	RGATCY	5 cut(s)	355, 769, 811, 904, 973
BstYI	RGATCY	5 cut(s)	355, 769, 811, 904, 973
BsuRI	GGCC	5 cut(s)	10, 415, 620, 764, 1052
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	1039
BtsIMutI	CAGTG	1 cut(s)	626
Cac8I	GCNNGC	3 cut(s)	757, 782, 1146
CfoI	GCGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	5 cut(s)	8, 414, 487, 619, 1051
Csp6I	GTAC	2 cut(s)	495, 500
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	5 cut(s)	411, 455, 484, 727, 760
CviQI	GTAC	2 cut(s)	495, 500
DdeI	CTNAG	8 cut(s)	51, 69, 396, 738, 773, 908, 933, 990
DpnI	GATC	6 cut(s)	357, 392, 771, 813, 906, 975
DpnII	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
DraI	TTTAAA	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco130I	CCWWGG	3 cut(s)	483, 490, 765
Eco24I	GRGCYC	1 cut(s)	1125
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	3 cut(s)	159, 921, 1095
Eco72I	CACGTG	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	1080
EcoT14I	CCWWGG	3 cut(s)	483, 490, 765
EcoT22I	ATGCAT	2 cut(s)	67, 1039
EcoT38I	GRGCYC	1 cut(s)	1125
ErhI	CCWWGG	3 cut(s)	483, 490, 765
FaeI	CATG	5 cut(s)	414, 458, 487, 730, 763
FaqI	GGGAC	2 cut(s)	58, 889
FatI	CATG	5 cut(s)	410, 454, 483, 726, 759
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	8 cut(s)	135, 318, 333, 336, 339, 778, 1059, 1062
FokI	GGATG	1 cut(s)	1046
FriOI	GRGCYC	1 cut(s)	1125
Fsp4HI	GCNGC	8 cut(s)	135, 318, 333, 336, 339, 778, 1059, 1062
FspBI	CTAG	1 cut(s)	120
FspI	TGCGCA	1 cut(s)	963
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	8 cut(s)	135, 318, 333, 336, 339, 778, 1059, 1062
HaeIII	GGCC	5 cut(s)	10, 415, 620, 764, 1052
HapII	CCGG	1 cut(s)	519
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	5 cut(s)	414, 458, 487, 730, 763
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HinfI	GANTC	3 cut(s)	55, 116, 158
HpaII	CCGG	1 cut(s)	519
Hpy166II	GTNNAC	2 cut(s)	610, 724
Hpy188I	TCNGA	5 cut(s)	27, 52, 834, 993, 1129
Hpy188III	TCNNGA	8 cut(s)	120, 155, 571, 899, 935, 944, 977, 1073
Hpy8I	GTNNAC	2 cut(s)	610, 724
HpyCH4III	ACNGT	4 cut(s)	81, 499, 630, 891
HpyCH4IV	ACGT	2 cut(s)	322, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 338, 761, 1058, 1145
HpyF3I	CTNAG	8 cut(s)	51, 69, 396, 738, 773, 908, 933, 990
HpySE526I	ACGT	2 cut(s)	322, 612
Hsp92II	CATG	5 cut(s)	414, 458, 487, 730, 763
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
LmnI	GCTCC	2 cut(s)	91, 1120
Lsp1109I	GCAGC	6 cut(s)	322, 325, 329, 789, 1045, 1048
LweI	GCATC	4 cut(s)	74, 304, 1024, 1120
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	2 cut(s)	322, 612
MalI	GATC	6 cut(s)	357, 392, 771, 813, 906, 975
MboI	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
MboII	GAAGA	3 cut(s)	656, 692, 914
MflI	RGATCY	5 cut(s)	355, 769, 811, 904, 973
MhlI	GDGCHC	2 cut(s)	222, 1125
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	4 cut(s)	14, 171, 638, 1068
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	612
Mox20I	TGGCCA	1 cut(s)	764
Mph1103I	ATGCAT	2 cut(s)	67, 1039
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	8 cut(s)	186, 288, 297, 384, 1016, 1040, 1047, 1152
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	1082
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	5 cut(s)	91, 338, 761, 1058, 1145
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
NlaIII	CATG	5 cut(s)	414, 458, 487, 730, 763
NlaIV	GGNNCC	2 cut(s)	93, 1122
NsbI	TGCGCA	1 cut(s)	963
NsiI	ATGCAT	2 cut(s)	67, 1039
PasI	CCCWGGG	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	116, 158
PflMI	CCANNNNNTGG	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	518
PkrI	GCNGC	8 cut(s)	136, 319, 334, 337, 340, 779, 1060, 1063
PleI	GAGTC	1 cut(s)	49
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	2 cut(s)	323, 613
Psp6I	CCWGG	1 cut(s)	1080
PspCI	CACGTG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	1080
PspN4I	GGNNCC	2 cut(s)	93, 1122
PspPI	GGNCC	5 cut(s)	8, 414, 487, 619, 1051
PsuI	RGATCY	5 cut(s)	355, 769, 811, 904, 973
RsaI	GTAC	2 cut(s)	496, 501
RsaNI	GTAC	2 cut(s)	495, 500
SaqAI	TTAA	8 cut(s)	186, 288, 297, 384, 1016, 1040, 1047, 1152
SatI	GCNGC	8 cut(s)	135, 318, 333, 336, 339, 778, 1059, 1062
Sau3AI	GATC	6 cut(s)	355, 390, 769, 811, 904, 973
Sau96I	GGNCC	5 cut(s)	8, 414, 487, 619, 1051
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	1082
SduI	GDGCHC	2 cut(s)	222, 1125
SfaNI	GCATC	4 cut(s)	74, 304, 1024, 1120
SfcI	CTRYAG	2 cut(s)	77, 429
SinI	GGWCC	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	194, 229
SmoI	CTYRAG	2 cut(s)	194, 229
Sse9I	AATT	4 cut(s)	14, 171, 638, 1068
SsiI	CCGC	3 cut(s)	134, 333, 375
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	1080
StyI	CCWWGG	3 cut(s)	483, 490, 765
TaaI	ACNGT	4 cut(s)	81, 499, 630, 891
TaiI	ACGT	2 cut(s)	325, 615
TaqI	TCGA	2 cut(s)	216, 260
TasI	AATT	4 cut(s)	14, 171, 638, 1068
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	2 cut(s)	137, 335
TfiI	GAWTC	2 cut(s)	116, 158
Tru1I	TTAA	8 cut(s)	186, 288, 297, 384, 1016, 1040, 1047, 1152
Tru9I	TTAA	8 cut(s)	186, 288, 297, 384, 1016, 1040, 1047, 1152
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	6 cut(s)	317, 335, 338, 777, 1058, 1061
TspDTI	ATGAA	4 cut(s)	34, 93, 183, 743
TspRI	CASTG	1 cut(s)	633
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	171, 1068
XbaI	TCTAGA	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	1 cut(s)	120
Zsp2I	ATGCAT	2 cut(s)	67, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.