Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

13036035 .. 13038859

Gene Structure 2825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAGAACTTATGCGCCAATTTGGCACCATATTGCGTCAAATTACACAACACAAGTGGGCATGGCCCTTTTTGCAACCTGTAGATGTAGAAGGTCTTGGTTTACATGATTATTATGAGGTCATTGACAAGCCAATGGATTTCAGTACAATTAAAAATCAAATGGAGGCCAAGGATGGTACTGGGTATAAAAACGTAAGGGAGATATGTGCTGATGTGCGGTTAGTTTTCAAAAATGCGATGAAGTATAATGAGGAGAGAAGTGATGTTCATGTTATGGCCAAAACATTGATGGCAAAATTTGAGGAAAAGTGGCTGCAGCTTCTGCCTAAGGTTACTGAAGAGGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAATTAAATATGCAGCTTGCTGAAGAGGCTGCTCATGCTAAAATGGCTAGAGACTTAAGCAACGAGCTTTATGAGGTTGATATGCATTTGGAAGAGCTCCGAGATATGGTTGTTCAAAAGTGCAGAAAAATGTCAACTGAAGAGAAGAGAAAGCTTGGGGTAGCCCTCAGCAGACTGTCCCCAGAGGATCTCAGCACAGCACTAGAGATTGTTGCACAAAGTAATCCAGGTTTTCAAGCTACCGCTGAAGAGGTGGACCTTGATATCGACGCTCAGACTGAATCTACCTTGTGGAGGTTGAAGTTTTTTGTGAAGGACACTTTAGAAGTTCAGGCCAAGAGCTCAGCAAGCATGGGCGCCACCAACAATGACAACACTAACAACCATAACAGCGGTAACAAAAATAACATCAACAACGCTAACAATAAGCGAAAAAGGGAGATTTGTAATGCTATTGCCAAAACCAATAAAAAGAATAAAAAACCAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

290

Amino Acids

33.3

Weight (kDa)

5.69

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	10 - 95	6.4e-18	Bromodomain
BET	PF17035	169 - 232	1.2e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 734
AciI	CCGC	3 cut(s)	220, 621, 771
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	4 cut(s)	360, 420, 537, 645
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	2 cut(s)	148, 181
AfiI	CCNNNNNNNGG	2 cut(s)	484, 672
AflII	CTTAAG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	232, 494, 614, 679
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	8 cut(s)	322, 394, 445, 475, 532, 617, 720, 866
AluI	AGCT	8 cut(s)	322, 394, 445, 475, 532, 617, 720, 866
Alw21I	GWGCWC	2 cut(s)	477, 722
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	573
AlwNI	CAGNNNCTG	1 cut(s)	325
AoxI	GGCC	4 cut(s)	65, 168, 279, 711
ApeKI	GCWGC	4 cut(s)	316, 319, 391, 407
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	18, 737
AspS9I	GGNCC	2 cut(s)	66, 634
AvaII	GGWCC	1 cut(s)	634
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	26, 734
BanII	GRGCYC	2 cut(s)	477, 722
Bbv12I	GWGCWC	2 cut(s)	477, 722
BbvCI	CCTCAGC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	303, 331, 394, 403
BccI	CCATC	2 cut(s)	170, 286
BciT130I	CCWGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	3 cut(s)	356, 426, 581
BfmI	CTRYAG	2 cut(s)	81, 317
BfoI	RGCGCY	1 cut(s)	738
BfrI	CTTAAG	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	24
BisI	GCNGC	4 cut(s)	317, 320, 392, 408
BlpI	GCTNAGC	1 cut(s)	721
BlsI	GCNGC	4 cut(s)	318, 321, 393, 409
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	66, 634
BmiI	GGNNCC	2 cut(s)	28, 736
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	735
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 672
Bse1I	ACTGG	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	484, 672
BseMII	CTCAG	4 cut(s)	559, 583, 665, 735
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	4 cut(s)	303, 331, 394, 403
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	4 cut(s)	67, 170, 281, 713
BshNI	GGYRCC	2 cut(s)	26, 734
BsiHKAI	GWGCWC	2 cut(s)	477, 722
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	484, 672
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	67, 170, 281, 713
Bsp1286I	GDGCHC	2 cut(s)	477, 722
Bsp143I	GATC	1 cut(s)	565
Bsp1720I	GCTNAGC	1 cut(s)	721
BspACI	CCGC	3 cut(s)	220, 621, 771
BspANI	GGCC	4 cut(s)	67, 170, 281, 713
BspCNI	CTCAG	4 cut(s)	558, 582, 664, 734
BspLI	GGNNCC	2 cut(s)	28, 736
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	573
BspQI	GCTCTTC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	26, 734
BspTI	CTTAAG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	8 cut(s)	336, 354, 360, 396, 465, 513, 518, 621
BstACI	GRCGYC	1 cut(s)	735
BstAFI	CTTAAG	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	396, 727
BstDEI	CTNAG	5 cut(s)	330, 545, 569, 651, 721
BstENI	CCTNNNNNAGG	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	2 cut(s)	18, 737
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 73, 325, 404, 413, 422, 726
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	2 cut(s)	81, 317
BstV1I	GCAGC	4 cut(s)	303, 331, 394, 403
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	67, 170, 281, 713
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	396, 727
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	18, 737
Cfr13I	GGNCC	2 cut(s)	66, 634
CseI	GACGC	2 cut(s)	26, 656
Csp6I	GTAC	2 cut(s)	147, 180
CspCI	CAANNNNNGTGG	2 cut(s)	38, 73
CviAII	CATG	5 cut(s)	63, 107, 272, 413, 730
CviQI	GTAC	2 cut(s)	147, 180
DdeI	CTNAG	5 cut(s)	330, 545, 569, 651, 721
DinI	GGCGCC	1 cut(s)	736
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	8 cut(s)	336, 354, 360, 396, 465, 513, 518, 621
EarI	CTCTTC	8 cut(s)	336, 354, 360, 396, 465, 513, 518, 621
Ecl136II	GAGCTC	2 cut(s)	475, 720
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	477, 722
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	2 cut(s)	475, 720
Eco57I	CTGAAG	4 cut(s)	360, 420, 537, 645
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	2 cut(s)	475, 720
EcoNI	CCTNNNNNAGG	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	2 cut(s)	477, 722
EgeI	GGCGCC	1 cut(s)	736
EheI	GGCGCC	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	66, 110, 275, 416, 733
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	5 cut(s)	62, 106, 271, 412, 729
Fnu4HI	GCNGC	4 cut(s)	317, 320, 392, 408
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	477, 722
Fsp4HI	GCNGC	4 cut(s)	317, 320, 392, 408
FspBI	CTAG	3 cut(s)	356, 426, 581
GlaI	GCGC	2 cut(s)	17, 736
GluI	GCNGC	4 cut(s)	317, 320, 392, 408
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	4 cut(s)	67, 170, 281, 713
HgaI	GACGC	2 cut(s)	26, 656
HhaI	GCGC	2 cut(s)	18, 737
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	5 cut(s)	66, 110, 275, 416, 733
Hin6I	GCGC	2 cut(s)	16, 735
HinP1I	GCGC	2 cut(s)	16, 735
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	1 cut(s)	659
Hpy166II	GTNNAC	3 cut(s)	104, 513, 634
Hpy188I	TCNGA	2 cut(s)	479, 654
Hpy188III	TCNNGA	1 cut(s)	870
Hpy8I	GTNNAC	3 cut(s)	104, 513, 634
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	2 cut(s)	86, 685
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	7 cut(s)	4, 76, 319, 391, 463, 501, 593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 73, 325, 404, 413, 422, 726
HpyF3I	CTNAG	5 cut(s)	330, 545, 569, 651, 721
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	5 cut(s)	66, 110, 275, 416, 733
HspAI	GCGC	2 cut(s)	16, 735
KasI	GGCGCC	1 cut(s)	734
Kzo9I	GATC	1 cut(s)	565
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	6 cut(s)	93, 168, 573, 591, 618, 695
Lsp1109I	GCAGC	4 cut(s)	303, 331, 394, 403
MaeI	CTAG	3 cut(s)	356, 426, 581
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	334, 773
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	8 cut(s)	353, 371, 377, 413, 482, 530, 535, 638
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	477, 722
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	5 cut(s)	20, 42, 150, 299, 380
MluNI	TGGCCA	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	153, 383, 434
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	623, 771
MspCI	CTTAAG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	7 cut(s)	24, 73, 325, 404, 413, 422, 726
NarI	GGCGCC	1 cut(s)	735
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	66, 110, 275, 416, 733
NlaIV	GGNNCC	2 cut(s)	28, 736
NsiI	ATGCAT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	4 cut(s)	318, 321, 393, 409
PluTI	GGCGCC	1 cut(s)	738
Psp124BI	GAGCTC	2 cut(s)	477, 722
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	28, 736
PspPI	GGNCC	2 cut(s)	66, 634
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	2 cut(s)	148, 181
RsaNI	GTAC	2 cut(s)	147, 180
SacI	GAGCTC	2 cut(s)	477, 722
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	3 cut(s)	153, 383, 434
SatI	GCNGC	4 cut(s)	317, 320, 392, 408
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	2 cut(s)	66, 634
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	477, 722
SfcI	CTRYAG	2 cut(s)	81, 317
SfoI	GGCGCC	1 cut(s)	736
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	5 cut(s)	20, 42, 150, 299, 380
SsiI	CCGC	3 cut(s)	220, 621, 771
SspDI	GGCGCC	1 cut(s)	734
SspMI	CTAG	3 cut(s)	356, 426, 581
SstI	GAGCTC	2 cut(s)	477, 722
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	645
TasI	AATT	5 cut(s)	20, 42, 150, 299, 380
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	3 cut(s)	153, 383, 434
Tru9I	TTAA	3 cut(s)	153, 383, 434
TseI	GCWGC	4 cut(s)	316, 319, 391, 407
TspDTI	ATGAA	2 cut(s)	257, 260
Vha464I	CTTAAG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	634
XagI	CCTNNNNNAGG	1 cut(s)	670
XapI	RAATTY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	3 cut(s)	356, 426, 581
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.