MD06G1168600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001287
Physical Location & Seq
Reverse (-)
30859844 .. 30868666
8823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1168600.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTGTGTTGTTGTACAGCCAGCTATGGGAAAATCTAAAACAGTTGATGAAGAGATGGACCCAGTAAGTTCATCAAACCCAGATTTTAGTAGTGTTGATGGTGCGGCTGTAGTTGAACCAAAAACTCTCCAAGATGCCAATTTTCTTAAAGGCAGTGTTAAGCTCAGCTCAGCTCAGTTCCGGGTGTCCAAATCAATCAGTTTTCCAACCCATCCTTCTGAAAGCCATGCCTGCTTGCTAAGCTTCACAATCCCGAACCCGGAAATCCTTTCAATTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.01

Weight (kDa)

5.13

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 26, 259
AgsI TTSAA 2 cut(s) 116, 273
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 5 cut(s) 23, 163, 168, 173, 243
AluI AGCT 5 cut(s) 23, 163, 168, 173, 243
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 2 cut(s) 182, 260
AvaII GGWCC 1 cut(s) 58
BccI CCATC 3 cut(s) 49, 92, 219
BcnI CCSGG 2 cut(s) 182, 260
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 3 cut(s) 164, 169, 239
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 182, 260
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 2 cut(s) 182, 260
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 56
Bpu1102I GCTNAGC 3 cut(s) 164, 169, 239
BpuMI CCSGG 2 cut(s) 182, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 259
Bse1I ACTGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 26, 259
BseMII CTCAG 3 cut(s) 178, 183, 188
BseNI ACTGG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 181, 260
BslI CCNNNNNNNGG 2 cut(s) 26, 259
Bsp1407I TGTACA 1 cut(s) 13
Bsp1720I GCTNAGC 3 cut(s) 164, 169, 239
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 177, 182, 187
BspLI GGNNCC 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 21, 232, 236
BstDEI CTNAG 5 cut(s) 164, 169, 174, 239, 279
BstF5I GGATG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 231, 240
BstSCI CCNGG 2 cut(s) 180, 258
BstSFI CTRYAG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 21, 232, 236
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 227
CviJI RGCY 8 cut(s) 19, 23, 107, 163, 168, 173, 225, 243
CviKI_1 RGCY 8 cut(s) 19, 23, 107, 163, 168, 173, 225, 243
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 5 cut(s) 164, 169, 174, 239, 279
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 58
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 26, 228
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HapII CCGG 2 cut(s) 181, 260
Hin1II CATG 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 241
HpaII CCGG 2 cut(s) 181, 260
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 240
HpyF3I CTNAG 5 cut(s) 164, 169, 174, 239, 279
Hsp92II CATG 1 cut(s) 230
LpnPI CCDG 6 cut(s) 33, 75, 93, 194, 244, 273
LweI GCATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 62
MluCI AATT 2 cut(s) 139, 273
MmeI TCCRAC 1 cut(s) 230
MseI TTAA 2 cut(s) 147, 159
MspI CCGG 2 cut(s) 181, 260
MspR9I CCNGG 2 cut(s) 182, 260
MwoI GCNNNNNNNGC 2 cut(s) 231, 240
NciI CCSGG 2 cut(s) 182, 260
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 147, 159
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 182, 260
SetI ASST 5 cut(s) 25, 165, 170, 175, 245
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 58
Sse9I AATT 2 cut(s) 139, 273
SsiI CCGC 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 180, 258
TaaI ACNGT 1 cut(s) 43
TasI AATT 2 cut(s) 139, 273
TatI WGTACW 1 cut(s) 13
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 147, 159
Tru9I TTAA 2 cut(s) 147, 159
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 60, 63
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.