Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

16157215 .. 16161307

Gene Structure 4093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTCATCTCTGAGACTCACTATGCATCTCAGTCCCTACAGTTGCAGATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCGATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACACTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCATGGCCCTTTATGTCGCCTGTAGATGTTAAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACAGTTCAAAGTAAAATGGAAACTGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAACGCAATCAAATACAATGATGACAAAGATGATGTCCACGTGATGGCCGAAACACTGTTGGAAAAATTAGAAGAAAAGTGGCTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGCGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTTCAGAAGTGCAGAAAAATGTCTTTTGATGATAAAAGACGACTTGGGACAGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGTGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGCTGCTGCACAAATTCCTGAAGCCATGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAGCCTGCCGTTAAAAGAACTAAAAAAATCTCCACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

380

Amino Acids

43.37

Weight (kDa)

7.08

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	112 - 195	1.8e-19	Bromodomain
BET	PF17035	269 - 332	2.7e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	3 cut(s)	95, 294, 336
AclWI	GGATC	2 cut(s)	738, 942
AcoI	YGGCCR	2 cut(s)	579, 723
AcsI	RAATTY	2 cut(s)	132, 1029
AcuI	CTGAAG	3 cut(s)	120, 882, 1056
AcvI	CACGTG	1 cut(s)	574
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	222, 577
AgsI	TTSAA	6 cut(s)	325, 346, 464, 532, 641, 769
AluBI	AGCT	3 cut(s)	745, 842, 1019
AluI	AGCT	3 cut(s)	745, 842, 1019
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	738, 942
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	4 cut(s)	374, 579, 723, 1011
ApeKI	GCWGC	7 cut(s)	265, 278, 296, 299, 738, 1019, 1022
ApoI	RAATTY	2 cut(s)	132, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	552, 584
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	3 cut(s)	375, 448, 1012
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	1086
BbrPI	CACGTG	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	7 cut(s)	277, 283, 286, 290, 750, 1006, 1009
BccI	CCATC	2 cut(s)	43, 571
BceAI	ACGGC	1 cut(s)	1094
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	2 cut(s)	38, 390
BglI	GCCNNNNNGGC	1 cut(s)	722
BglII	AGATCT	3 cut(s)	316, 772, 865
BisI	GCNGC	9 cut(s)	96, 266, 279, 294, 297, 300, 739, 1020, 1023
BlsI	GCNGC	9 cut(s)	97, 267, 280, 295, 298, 301, 740, 1021, 1024
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	3 cut(s)	375, 448, 1012
BmiI	GGNNCC	2 cut(s)	54, 1083
BmsI	GCATC	4 cut(s)	35, 265, 985, 1081
Bpu10I	CCTNAGC	2 cut(s)	699, 894
BpuEI	CTTGAG	2 cut(s)	176, 211
BsaAI	YACGTR	2 cut(s)	284, 574
BsaJI	CCNNGG	4 cut(s)	444, 451, 726, 1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 577
Bse1I	ACTGG	1 cut(s)	484
BseDI	CCNNGG	4 cut(s)	444, 451, 726, 1041
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	2 cut(s)	222, 577
BseMII	CTCAG	6 cut(s)	44, 371, 690, 883, 908, 965
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	2 cut(s)	659, 716
BseXI	GCAGC	7 cut(s)	277, 283, 286, 290, 750, 1006, 1009
BsgI	GTGCAG	2 cut(s)	820, 1008
BshFI	GGCC	4 cut(s)	376, 581, 725, 1013
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	905
BslFI	GGGAC	2 cut(s)	19, 850
BslI	CCNNNNNNNGG	2 cut(s)	222, 577
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	19, 850
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	376, 581, 725, 1013
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	2 cut(s)	183, 1086
Bsp143I	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
Bsp19I	CCATGG	2 cut(s)	444, 1041
BspACI	CCGC	3 cut(s)	95, 294, 336
BspANI	GGCC	4 cut(s)	376, 581, 725, 1013
BspCNI	CTCAG	7 cut(s)	4, 43, 370, 691, 882, 907, 964
BspLI	GGNNCC	2 cut(s)	54, 1083
BspPI	GGATC	2 cut(s)	738, 942
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	4 cut(s)	444, 451, 726, 1041
BssMI	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
BssT1I	CCWWGG	4 cut(s)	444, 451, 726, 1041
Bst4CI	ACNGT	4 cut(s)	42, 460, 591, 852
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	2 cut(s)	284, 574
BstC8I	GCNNGC	3 cut(s)	718, 743, 1107
BstDEI	CTNAG	8 cut(s)	12, 30, 357, 699, 734, 869, 894, 951
BstDSI	CCRYGG	2 cut(s)	444, 1041
BstF5I	GGATG	1 cut(s)	1000
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	6 cut(s)	319, 354, 733, 775, 868, 937
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 299, 722, 1019, 1106
BstSFI	CTRYAG	2 cut(s)	38, 390
BstV1I	GCAGC	7 cut(s)	277, 283, 286, 290, 750, 1006, 1009
BstX2I	RGATCY	5 cut(s)	316, 730, 772, 865, 934
BstYI	RGATCY	5 cut(s)	316, 730, 772, 865, 934
BsuRI	GGCC	4 cut(s)	376, 581, 725, 1013
BtgI	CCRYGG	2 cut(s)	444, 1041
BtsCI	GGATG	1 cut(s)	1000
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	718, 743, 1107
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	3 cut(s)	375, 448, 1012
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	6 cut(s)	372, 416, 445, 688, 721, 1042
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	8 cut(s)	12, 30, 357, 699, 734, 869, 894, 951
DpnI	GATC	6 cut(s)	318, 353, 732, 774, 867, 936
DpnII	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
EaeI	YGGCCR	2 cut(s)	579, 723
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	4 cut(s)	444, 451, 726, 1041
Eco24I	GRGCYC	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	3 cut(s)	120, 882, 1056
Eco72I	CACGTG	1 cut(s)	574
Eco88I	CYCGRG	1 cut(s)	905
EcoT14I	CCWWGG	4 cut(s)	444, 451, 726, 1041
EcoT22I	ATGCAT	2 cut(s)	28, 1000
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	4 cut(s)	444, 451, 726, 1041
FaeI	CATG	6 cut(s)	375, 419, 448, 691, 724, 1045
FaqI	GGGAC	2 cut(s)	19, 850
FatI	CATG	6 cut(s)	371, 415, 444, 687, 720, 1041
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	9 cut(s)	96, 266, 279, 294, 297, 300, 739, 1020, 1023
FokI	GGATG	1 cut(s)	1007
FriOI	GRGCYC	1 cut(s)	1086
Fsp4HI	GCNGC	9 cut(s)	96, 266, 279, 294, 297, 300, 739, 1020, 1023
FspBI	CTAG	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	9 cut(s)	96, 266, 279, 294, 297, 300, 739, 1020, 1023
HaeIII	GGCC	4 cut(s)	376, 581, 725, 1013
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	6 cut(s)	375, 419, 448, 691, 724, 1045
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HinfI	GANTC	3 cut(s)	16, 77, 119
Hpy166II	GTNNAC	2 cut(s)	571, 685
Hpy188I	TCNGA	4 cut(s)	13, 795, 954, 1090
Hpy188III	TCNNGA	8 cut(s)	81, 116, 532, 860, 896, 905, 938, 1034
Hpy8I	GTNNAC	2 cut(s)	571, 685
HpyCH4III	ACNGT	4 cut(s)	42, 460, 591, 852
HpyCH4IV	ACGT	2 cut(s)	283, 573
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 299, 722, 1019, 1106
HpyF3I	CTNAG	8 cut(s)	12, 30, 357, 699, 734, 869, 894, 951
HpySE526I	ACGT	2 cut(s)	283, 573
Hsp92II	CATG	6 cut(s)	375, 419, 448, 691, 724, 1045
HspAI	GCGC	1 cut(s)	923
Kzo9I	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
LmnI	GCTCC	2 cut(s)	52, 1081
Lsp1109I	GCAGC	7 cut(s)	277, 283, 286, 290, 750, 1006, 1009
LweI	GCATC	4 cut(s)	35, 265, 985, 1081
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	283, 573
MaeIII	GTNAC	1 cut(s)	956
MalI	GATC	6 cut(s)	318, 353, 732, 774, 867, 936
MboI	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
MboII	GAAGA	4 cut(s)	334, 617, 653, 875
MflI	RGATCY	5 cut(s)	316, 730, 772, 865, 934
MhlI	GDGCHC	2 cut(s)	183, 1086
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	3 cut(s)	132, 599, 1029
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	573
Mox20I	TGGCCA	1 cut(s)	725
Mph1103I	ATGCAT	2 cut(s)	28, 1000
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	8 cut(s)	147, 249, 258, 399, 977, 1001, 1008, 1113
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	5 cut(s)	52, 299, 722, 1019, 1106
NcoI	CCATGG	2 cut(s)	444, 1041
NdeII	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
NlaIII	CATG	6 cut(s)	375, 419, 448, 691, 724, 1045
NlaIV	GGNNCC	2 cut(s)	54, 1083
NmuCI	GTSAC	1 cut(s)	956
NsbI	TGCGCA	1 cut(s)	924
NsiI	ATGCAT	2 cut(s)	28, 1000
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	77, 119
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	9 cut(s)	97, 267, 280, 295, 298, 301, 740, 1021, 1024
PleI	GAGTC	1 cut(s)	10
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	2 cut(s)	284, 574
PspCI	CACGTG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	54, 1083
PspPI	GGNCC	3 cut(s)	375, 448, 1012
PsuI	RGATCY	5 cut(s)	316, 730, 772, 865, 934
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	8 cut(s)	147, 249, 258, 399, 977, 1001, 1008, 1113
SatI	GCNGC	9 cut(s)	96, 266, 279, 294, 297, 300, 739, 1020, 1023
Sau3AI	GATC	6 cut(s)	316, 351, 730, 772, 865, 934
Sau96I	GGNCC	3 cut(s)	375, 448, 1012
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	183, 1086
SfaNI	GCATC	4 cut(s)	35, 265, 985, 1081
SfcI	CTRYAG	2 cut(s)	38, 390
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	155, 190
SmoI	CTYRAG	2 cut(s)	155, 190
Sse9I	AATT	3 cut(s)	132, 599, 1029
SsiI	CCGC	3 cut(s)	95, 294, 336
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	4 cut(s)	444, 451, 726, 1041
TaaI	ACNGT	4 cut(s)	42, 460, 591, 852
TaiI	ACGT	2 cut(s)	286, 576
TaqI	TCGA	3 cut(s)	126, 177, 221
TasI	AATT	3 cut(s)	132, 599, 1029
TauI	GCSGC	2 cut(s)	98, 296
TfiI	GAWTC	2 cut(s)	77, 119
Tru1I	TTAA	8 cut(s)	147, 249, 258, 399, 977, 1001, 1008, 1113
Tru9I	TTAA	8 cut(s)	147, 249, 258, 399, 977, 1001, 1008, 1113
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	7 cut(s)	265, 278, 296, 299, 738, 1019, 1022
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	3 cut(s)	54, 144, 704
TspRI	CASTG	1 cut(s)	594
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	132, 1029
XbaI	TCTAGA	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	2 cut(s)	28, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.