Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

55351597 .. 55354085

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATCAAGTGGAGGCACCAATTGTCGATGTCAGCCATGTTGGTGCTCTAGATTTTACTGGCAATGGTGTAGAAGCCGAGTCTTTCAAGCACCGCGTTGATGAAATTTTCGTTCAGGTTGACAAGGTCATTGACAAGCCAATGGATTTCAGTACAATTAAAAATCAAATGGAGGCCAAGGATGGTACTGGGTATAAAAACGTAAGGGAGATCTGTGCTGATGTGCGGTTAGTTTTCAAAAATGCGATGCAGTATAATGAGGAGAGAAGTGATGTTCATGTTATGGCCAAAACTTTGATGGCAAAATTTGAGGAAAAGTGGCTGCAGCTTCTGCCTAAGGTTACTGAAGAGGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAATTAAATATGCAGCTTGCTGAAGAGGCTGCTCATGCTAAAATGGCTAGAGACTTAAGCAACGAGCTTTATGAGGTTGATATGCATTTGGAGGAGCTCCGAGATATGGTTGTTCAAAAGTGCAGAAAAATGTCAACTGAAGAGAAGAGAAAGCTTGGGGTAGCCCTCAGCAGACTGTCCCCAGAGGATCTCAGCACAGCACTAGAGATTGTTGCACAAAGTAATCCAGGTTTTCAAGCTACCGCCGAAGAGGTGGACCTTGATATCGATGCTCAGACTGAATCTACCTTGTGGAGGTTGAAGTTTTTTGTGAAGGACACTTTAGAAGTTCAGGCCAAGAGCTCAGCAAGCACCGGCGCCGCCAACAATGACAACACTAACAACCATAACAGCGGTAACAAAAATAACATCAACAACGCTAACAATAAGCGAAAAAGGGAGATTTGTAATGCTATTGCCAAAACCAATAAAAAGAATAAAAAACCAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

292

Amino Acids

32.99

Weight (kDa)

5.23

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	27 - 97	2.9e-12	Bromodomain
BET	PF17035	171 - 234	1.2e-18	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	16, 740
AccII	CGCG	1 cut(s)	96
AciI	CCGC	5 cut(s)	94, 226, 627, 744, 777
AclWI	GGATC	2 cut(s)	12, 579
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	105, 305
AcuI	CTGAAG	3 cut(s)	366, 426, 543
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	2 cut(s)	154, 187
AfiI	CCNNNNNNNGG	2 cut(s)	490, 678
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	88, 238, 500, 620, 685
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	8 cut(s)	328, 400, 451, 481, 538, 623, 726, 872
AluI	AGCT	8 cut(s)	328, 400, 451, 481, 538, 623, 726, 872
Alw21I	GWGCWC	3 cut(s)	49, 483, 728
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	12, 579
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	3 cut(s)	174, 285, 717
ApeKI	GCWGC	4 cut(s)	322, 325, 397, 413
ApoI	RAATTY	2 cut(s)	105, 305
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	640
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	16, 740
BanII	GRGCYC	2 cut(s)	483, 728
Bbv12I	GWGCWC	3 cut(s)	49, 483, 728
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	4 cut(s)	309, 337, 400, 409
BccI	CCATC	2 cut(s)	176, 292
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	4 cut(s)	50, 362, 432, 587
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	439
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	5 cut(s)	323, 326, 398, 414, 744
BlpI	GCTNAGC	1 cut(s)	727
BlsI	GCNGC	5 cut(s)	324, 327, 399, 415, 745
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	2 cut(s)	18, 742
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	237, 643
BmuI	ACTGGG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	727
Bsa29I	ATCGAT	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 678
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	2 cut(s)	64, 193
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	490, 678
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	4 cut(s)	565, 589, 671, 741
BseNI	ACTGG	2 cut(s)	64, 193
BseRI	GAGGAG	2 cut(s)	275, 491
BseXI	GCAGC	4 cut(s)	309, 337, 400, 409
BsgI	GTGCAG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	3 cut(s)	176, 287, 719
BshNI	GGYRCC	2 cut(s)	16, 740
BshVI	ATCGAT	1 cut(s)	651
BsiHKAI	GWGCWC	3 cut(s)	49, 483, 728
BsiSI	CCGG	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	490, 678
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	176, 287, 719
Bsp1286I	GDGCHC	3 cut(s)	49, 483, 728
Bsp143I	GATC	3 cut(s)	4, 210, 571
Bsp1720I	GCTNAGC	1 cut(s)	727
BspACI	CCGC	5 cut(s)	94, 226, 627, 744, 777
BspANI	GGCC	3 cut(s)	176, 287, 719
BspCNI	CTCAG	4 cut(s)	564, 588, 670, 740
BspDI	ATCGAT	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	18, 742
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	12, 579
BspT107I	GGYRCC	2 cut(s)	16, 740
BspTI	CTTAAG	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	2 cut(s)	64, 193
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	4, 210, 571
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	7 cut(s)	342, 360, 366, 402, 519, 524, 627
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	402, 733
BstDEI	CTNAG	5 cut(s)	336, 551, 575, 657, 727
BstENI	CCTNNNNNAGG	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	3 cut(s)	7, 213, 574
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	4, 210, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 410, 419, 428, 732
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	309, 337, 400, 409
BstX2I	RGATCY	2 cut(s)	210, 571
BstYI	RGATCY	2 cut(s)	210, 571
Bsu15I	ATCGAT	1 cut(s)	651
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	176, 287, 719
BsuTUI	ATCGAT	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	402, 733
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	743
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	640
ClaI	ATCGAT	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	153, 186
CviAII	CATG	3 cut(s)	38, 278, 419
CviQI	GTAC	2 cut(s)	153, 186
DdeI	CTNAG	5 cut(s)	336, 551, 575, 657, 727
DinI	GGCGCC	1 cut(s)	742
DpnI	GATC	3 cut(s)	6, 212, 573
DpnII	GATC	3 cut(s)	4, 210, 571
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	7 cut(s)	342, 360, 366, 402, 519, 524, 627
EarI	CTCTTC	7 cut(s)	342, 360, 366, 402, 519, 524, 627
Ecl136II	GAGCTC	2 cut(s)	481, 726
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	483, 728
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	640
Eco53kI	GAGCTC	2 cut(s)	481, 726
Eco57I	CTGAAG	3 cut(s)	366, 426, 543
Eco81I	CCTNAGG	1 cut(s)	336
EcoICRI	GAGCTC	2 cut(s)	481, 726
EcoNI	CCTNNNNNAGG	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	483, 728
EgeI	GGCGCC	1 cut(s)	742
EheI	GGCGCC	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	41, 281, 422
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	3 cut(s)	37, 277, 418
Fnu4HI	GCNGC	5 cut(s)	323, 326, 398, 414, 744
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	483, 728
Fsp4HI	GCNGC	5 cut(s)	323, 326, 398, 414, 744
FspBI	CTAG	4 cut(s)	50, 362, 432, 587
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	5 cut(s)	323, 326, 398, 414, 744
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	176, 287, 719
HapII	CCGG	1 cut(s)	738
HhaI	GCGC	1 cut(s)	743
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	3 cut(s)	41, 281, 422
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HincII	GTYRAC	2 cut(s)	121, 519
HindII	GTYRAC	2 cut(s)	121, 519
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	80, 665
HpaII	CCGG	1 cut(s)	738
Hpy166II	GTNNAC	3 cut(s)	121, 519, 640
Hpy188I	TCNGA	2 cut(s)	485, 660
Hpy188III	TCNNGA	2 cut(s)	50, 876
Hpy8I	GTNNAC	3 cut(s)	121, 519, 640
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	6 cut(s)	250, 325, 397, 469, 507, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 410, 419, 428, 732
HpyF3I	CTNAG	5 cut(s)	336, 551, 575, 657, 727
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	41, 281, 422
HspAI	GCGC	1 cut(s)	741
KasI	GGCGCC	1 cut(s)	740
Kzo9I	GATC	3 cut(s)	4, 210, 571
LmnI	GCTCC	2 cut(s)	478, 486
LpnPI	CCDG	8 cut(s)	45, 101, 174, 579, 597, 624, 701, 751
Lsp1109I	GCAGC	4 cut(s)	309, 337, 400, 409
LweI	GCATC	2 cut(s)	237, 643
MaeI	CTAG	4 cut(s)	50, 362, 432, 587
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	340, 779
MalI	GATC	3 cut(s)	6, 212, 573
MboI	GATC	3 cut(s)	4, 210, 571
MboII	GAAGA	7 cut(s)	359, 377, 383, 419, 536, 541, 644
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	210, 571
MhlI	GDGCHC	3 cut(s)	49, 483, 728
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	5 cut(s)	21, 105, 156, 305, 386
MluNI	TGGCCA	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	741
MlyI	GAGTC	1 cut(s)	89
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	3 cut(s)	159, 389, 440
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	777
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	331, 410, 419, 428, 732
NarI	GGCGCC	1 cut(s)	741
NdeII	GATC	3 cut(s)	4, 210, 571
NlaIII	CATG	3 cut(s)	41, 281, 422
NlaIV	GGNNCC	2 cut(s)	18, 742
NmeAIII	GCCGAG	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	324, 327, 399, 415, 745
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	2 cut(s)	483, 728
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	18, 742
PspPI	GGNCC	1 cut(s)	640
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	210, 571
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	154, 187
RsaNI	GTAC	2 cut(s)	153, 186
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	2 cut(s)	483, 728
SaqAI	TTAA	3 cut(s)	159, 389, 440
SatI	GCNGC	5 cut(s)	323, 326, 398, 414, 744
Sau3AI	GATC	3 cut(s)	4, 210, 571
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	3 cut(s)	49, 483, 728
SfaNI	GCATC	2 cut(s)	237, 643
SfcI	CTRYAG	1 cut(s)	323
SfoI	GGCGCC	1 cut(s)	742
SgrAI	CRCCGGYG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	5 cut(s)	21, 105, 156, 305, 386
SsiI	CCGC	5 cut(s)	94, 226, 627, 744, 777
SspDI	GGCGCC	1 cut(s)	740
SspMI	CTAG	4 cut(s)	50, 362, 432, 587
SstI	GAGCTC	2 cut(s)	483, 728
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	27, 651
TasI	AATT	5 cut(s)	21, 105, 156, 305, 386
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	159, 389, 440
Tru9I	TTAA	3 cut(s)	159, 389, 440
TseI	GCWGC	4 cut(s)	322, 325, 397, 413
TspDTI	ATGAA	2 cut(s)	117, 266
Tth111I	GACNNNGTC	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	640
XagI	CCTNNNNNAGG	1 cut(s)	676
XapI	RAATTY	2 cut(s)	105, 305
XbaI	TCTAGA	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	4 cut(s)	50, 362, 432, 587
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.