Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422649.1

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1424

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 629 bp

attacacaacacaagtgggcatggccctttttgcaacctgtagatgtagaaggtcttggtttacatgattattatgaggtcattgacaagccaatggatttcagtacaattaaaaatcaaatggaggccaaggatggtactgggtataaaaacgtaagggagatctgtgctgatgtgcggttagttttcaaaaatgcgatgcagtataatgaggagagaagtgatgttcatgttatggccaaaactttgatggcaaaatttgaggaaaagtggctgcagcttctgcctaaggttactgaagaggaaaagaggctagaagaggaagaggcagaagcacaattaaatatgcagcttgctgaagaggctgctcatgctaaaatggctagagacttaagcaacgagctttatgaggttgatatgcatttggaagagctccgagatatggttgttcaaaagtgcagaaaaatgtcaactgaagagaagagaaagcttggggtagccctcagcagactgtccccagaggatctcagcacagcactagagattgttgcacaaagtaatccaggttttcaagctactgctgaagaggtggaccttgatatcgatgctcaggtcactacttatatttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

210

Amino Acids

24.21

Weight (kDa)

4.72

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	4 cut(s)	318, 378, 495, 603
AfaI	GTAC	2 cut(s)	106, 139
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	190, 452, 572
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	6 cut(s)	280, 352, 403, 433, 490, 575
AluI	AGCT	6 cut(s)	280, 352, 403, 433, 490, 575
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	3 cut(s)	23, 126, 237
ApeKI	GCWGC	4 cut(s)	274, 277, 349, 365
ApoI	RAATTY	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	24, 592
AvaII	GGWCC	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	503
BbvI	GCAGC	4 cut(s)	261, 289, 352, 361
BccI	CCATC	2 cut(s)	128, 244
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	3 cut(s)	314, 384, 539
BfmI	CTRYAG	2 cut(s)	39, 275
BfrI	CTTAAG	1 cut(s)	391
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	4 cut(s)	275, 278, 350, 366
BlsI	GCNGC	4 cut(s)	276, 279, 351, 367
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	24, 592
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	189, 595
BmuI	ACTGGG	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	503, 609
Bsa29I	ATCGAT	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	3 cut(s)	517, 541, 623
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	261, 289, 352, 361
BsgI	GTGCAG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	25, 128, 239
BshVI	ATCGAT	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	25, 128, 239
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	162, 523
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	25, 128, 239
BspCNI	CTCAG	3 cut(s)	516, 540, 622
BspDI	ATCGAT	1 cut(s)	603
BspMAI	CTGCAG	1 cut(s)	279
BspPI	GGATC	1 cut(s)	531
BspQI	GCTCTTC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	162, 523
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	8 cut(s)	294, 312, 318, 354, 423, 471, 476, 579
BstAFI	CTTAAG	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	4 cut(s)	288, 503, 527, 609
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	165, 526
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	162, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 283, 362, 371, 380
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	2 cut(s)	39, 275
BstV1I	GCAGC	4 cut(s)	261, 289, 352, 361
BstX2I	RGATCY	2 cut(s)	162, 523
BstYI	RGATCY	2 cut(s)	162, 523
Bsu15I	ATCGAT	1 cut(s)	603
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	25, 128, 239
BsuTUI	ATCGAT	1 cut(s)	603
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	24, 592
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	2 cut(s)	105, 138
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	4 cut(s)	21, 65, 230, 371
CviQI	GTAC	2 cut(s)	105, 138
DdeI	CTNAG	4 cut(s)	288, 503, 527, 609
DpnI	GATC	2 cut(s)	164, 525
DpnII	GATC	2 cut(s)	162, 523
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	8 cut(s)	294, 312, 318, 354, 423, 471, 476, 579
EarI	CTCTTC	8 cut(s)	294, 312, 318, 354, 423, 471, 476, 579
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	4 cut(s)	318, 378, 495, 603
Eco81I	CCTNAGG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	562
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	24, 68, 233, 374
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	4 cut(s)	20, 64, 229, 370
Fnu4HI	GCNGC	4 cut(s)	275, 278, 350, 366
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	275, 278, 350, 366
FspBI	CTAG	3 cut(s)	314, 384, 539
GluI	GCNGC	4 cut(s)	275, 278, 350, 366
HaeIII	GGCC	3 cut(s)	25, 128, 239
Hin1II	CATG	4 cut(s)	24, 68, 233, 374
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	488
Hpy166II	GTNNAC	3 cut(s)	62, 471, 592
Hpy188I	TCNGA	1 cut(s)	437
Hpy8I	GTNNAC	3 cut(s)	62, 471, 592
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	34, 202, 277, 349, 421, 459, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 283, 362, 371, 380
HpyF3I	CTNAG	4 cut(s)	288, 503, 527, 609
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	24, 68, 233, 374
Kzo9I	GATC	2 cut(s)	162, 523
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	6 cut(s)	51, 126, 531, 549, 576, 596
Lsp1109I	GCAGC	4 cut(s)	261, 289, 352, 361
LweI	GCATC	2 cut(s)	189, 595
MaeI	CTAG	3 cut(s)	314, 384, 539
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	292, 613
MalI	GATC	2 cut(s)	164, 525
MboI	GATC	2 cut(s)	162, 523
MboII	GAAGA	8 cut(s)	311, 329, 335, 371, 440, 488, 493, 596
MflI	RGATCY	2 cut(s)	162, 523
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	108, 257, 338
MluNI	TGGCCA	1 cut(s)	239
Mox20I	TGGCCA	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	3 cut(s)	111, 341, 392
Msp20I	TGGCCA	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	5 cut(s)	31, 283, 362, 371, 380
NdeII	GATC	2 cut(s)	162, 523
NlaIII	CATG	4 cut(s)	24, 68, 233, 374
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	423
PkrI	GCNGC	4 cut(s)	276, 279, 351, 367
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspPI	GGNCC	2 cut(s)	24, 592
PstI	CTGCAG	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	162, 523
RsaI	GTAC	2 cut(s)	106, 139
RsaNI	GTAC	2 cut(s)	105, 138
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	111, 341, 392
SatI	GCNGC	4 cut(s)	275, 278, 350, 366
Sau3AI	GATC	2 cut(s)	162, 523
Sau96I	GGNCC	2 cut(s)	24, 592
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	189, 595
SfcI	CTRYAG	2 cut(s)	39, 275
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	108, 257, 338
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	3 cut(s)	314, 384, 539
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	513
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	603
TasI	AATT	3 cut(s)	108, 257, 338
TatI	WGTACW	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	111, 341, 392
Tru9I	TTAA	3 cut(s)	111, 341, 392
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	4 cut(s)	274, 277, 349, 365
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	1 cut(s)	218
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	314, 384, 539
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.