Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

20375317 .. 20376020

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1128700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAAGAGCTTATGCGCCAATTTTCTGTAATGTTCTGTCAGATCACTAAGCATGACTGGGCGTGGCCCTTTATGGTTCCTGTAGATGTTGAAGGTCTGGGATTGCATGACTATTATCAAGTCATTGAGAAGCCCATGGACCTTGGTACCATAAAAAAAAAAAAAAAAAATAGAATGGAAGCCAAGGATGGTAGTGAGTATAAGAATGTCGGAGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAGGATGTCTATGTGATGGCCCAATCGTTGTTGCAAAATTTCGAAAAAAAAAAATGGCTAAAGCTTCTGCCTAAAGTTGTTGAAGAGGAAACAAGACGAGCAGACGAGGAAGCAGAGGCACGGCGAAACATGCAACTATCTCAGGATGCTGCATTTGCCAACACGGCTAACGGTCTAAGCAGTGAGCTTTTTGAAATTGATGTGTATTTGAGGAACCTCAGACAAACAGTGGTTCAGAAGTGCAGGAAAATGTCTTCGGATGATAAAAGAAAACTCGGGACCGCACTCTCGCAGTTATCTGCCGAAGATCTCAGCAAGGCTCTAGAAATTGATGCACAGATACTTGGCGGCGAAAAGGAGGGCAGGTGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

216

Amino Acids

24.82

Weight (kDa)

5.88

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	14 - 99	2.2e-18	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	627
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	2 cut(s)	555, 621
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	4 cut(s)	92, 244, 356, 467
AluBI	AGCT	3 cut(s)	10, 337, 460
AluI	AGCT	3 cut(s)	10, 337, 460
Alw21I	GWGCWC	1 cut(s)	644
Alw44I	GTGCAC	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	2 cut(s)	65, 291
ApaLI	GTGCAC	1 cut(s)	640
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	310
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	4 cut(s)	66, 139, 292, 552
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	139, 552
BaeGI	GKGCMC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	182, 283
BceAI	ACGGC	2 cut(s)	410, 453
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	627
BglI	GCCNNNNNGGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	2 cut(s)	423, 622
BlsI	GCNGC	2 cut(s)	424, 623
Bme18I	GGWCC	2 cut(s)	139, 552
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	4 cut(s)	66, 139, 292, 552
BmiI	GGNNCC	4 cut(s)	78, 148, 488, 553
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	409, 595
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	135, 142, 183
BsaXI	ACNNNNNCTCC	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	135, 142, 183
BseGI	GGATG	4 cut(s)	193, 283, 424, 538
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	428, 505, 598
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	67, 293
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	67, 293
BsoBI	CYCGRG	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	2 cut(s)	42, 580
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	555, 621
BspANI	GGCC	2 cut(s)	67, 293
BspCNI	CTCAG	3 cut(s)	427, 504, 597
BspLI	GGNNCC	4 cut(s)	78, 148, 488, 553
BspMI	ACCTGC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	135, 142, 183
BssMI	GATC	2 cut(s)	42, 580
BssT1I	CCWWGG	3 cut(s)	135, 142, 183
Bst4CI	ACNGT	2 cut(s)	446, 502
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	48, 414, 449, 491, 584
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	193, 283, 424, 538
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	2 cut(s)	45, 583
BstMBI	GATC	2 cut(s)	42, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 428, 437
BstNSI	RCATGY	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	67, 293
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	193, 283, 424, 538
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	460, 507
BveI	ACCTGC	1 cut(s)	627
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	4 cut(s)	66, 139, 292, 552
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	4 cut(s)	53, 107, 136, 403
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	5 cut(s)	48, 414, 449, 491, 584
DpnI	GATC	2 cut(s)	44, 582
DpnII	GATC	2 cut(s)	42, 580
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	3 cut(s)	135, 142, 183
Eco47I	GGWCC	2 cut(s)	139, 552
Eco88I	CYCGRG	1 cut(s)	548
EcoT14I	CCWWGG	3 cut(s)	135, 142, 183
ErhI	CCWWGG	3 cut(s)	135, 142, 183
FaeI	CATG	4 cut(s)	56, 110, 139, 406
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	4 cut(s)	52, 106, 135, 402
Fnu4HI	GCNGC	2 cut(s)	423, 622
FokI	GGATG	4 cut(s)	200, 290, 431, 545
Fsp4HI	GCNGC	2 cut(s)	423, 622
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	423, 622
HaeIII	GGCC	2 cut(s)	67, 293
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	56, 110, 139, 406
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	335
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	5 cut(s)	42, 212, 494, 510, 532
Hpy188III	TCNNGA	4 cut(s)	244, 416, 550, 596
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	2 cut(s)	86, 263
HpyCH4III	ACNGT	2 cut(s)	446, 502
HpyCH4V	TGCA	9 cut(s)	4, 106, 251, 307, 406, 425, 516, 608, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 428, 437
HpyF3I	CTNAG	5 cut(s)	48, 414, 449, 491, 584
Hsp92II	CATG	4 cut(s)	56, 110, 139, 406
HspAI	GCGC	1 cut(s)	16
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	42, 580
LpnPI	CCDG	7 cut(s)	43, 83, 93, 221, 401, 502, 622
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	409, 595
MaeI	CTAG	1 cut(s)	596
MalI	GATC	2 cut(s)	44, 582
MboI	GATC	2 cut(s)	42, 580
MboII	GAAGA	3 cut(s)	368, 519, 590
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	4 cut(s)	20, 310, 468, 600
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	8 cut(s)	225, 268, 352, 373, 382, 477, 500, 625
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	403, 428, 437
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	42, 580
NlaIII	CATG	4 cut(s)	56, 110, 139, 406
NlaIV	GGNNCC	4 cut(s)	78, 148, 488, 553
NspI	RCATGY	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	627
PctI	GAATGC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	424, 623
PspN4I	GGNNCC	4 cut(s)	78, 148, 488, 553
PspPI	GGNCC	4 cut(s)	66, 139, 292, 552
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SatI	GCNGC	2 cut(s)	423, 622
Sau3AI	GATC	2 cut(s)	42, 580
Sau96I	GGNCC	4 cut(s)	66, 139, 292, 552
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	8 cut(s)	12, 97, 144, 274, 339, 462, 492, 641
SfaNI	GCATC	2 cut(s)	409, 595
SfcI	CTRYAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	2 cut(s)	139, 552
Sse9I	AATT	4 cut(s)	20, 310, 468, 600
SsiI	CCGC	2 cut(s)	555, 621
SspMI	CTAG	1 cut(s)	596
StyI	CCWWGG	3 cut(s)	135, 142, 183
TaaI	ACNGT	2 cut(s)	446, 502
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	20, 310, 468, 600
TauI	GCSGC	1 cut(s)	624
TscAI	CASTG	2 cut(s)	460, 507
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	269, 282
TspRI	CASTG	2 cut(s)	460, 507
VneI	GTGCAC	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	139, 552
XapI	RAATTY	1 cut(s)	310
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.