Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

22055230 .. 22058549

Gene Structure 3320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAAGAGCTTATGCGCCAATTTTCTGCAATGTTCCGTCAGATCACTAAGCTTGAATGGGCGTGGCCCTTTATGGATCCTGTAGATGTTGAACGTCTTGGATTGCATGACTATTATCAAGTCATTGAGAAGCCCATGGACCTTGGTACCATAAAAAATAGAATGGAAGCCAAGGATGGTAGTGAGTATAAGAATGTCAGGGAGATATATGCTGATGTGAGGCTGGTTTTCAAGAATGCAATGAAATATAATGATGAAGGTGAGGATGTCTATGTGATGGCCCAATCGTTGTTGAAAAAATTTGAAGAAAAATGGCTAAAGCTTCTGCCTAAAGTTGTTGAAGAGGAAACAAGACGAGCAGATGAGGAAGCAGAGGCACGGCGAAACATGCAACTATCTCAGGATGCTGCATATGCCAGCACAGCTAAGGATCTAAGCAATGAGCTTTTTGAGATTGATGTGTATTTGAGGAACCTCAGACAAACAGTGGTTCAGAAGTGCAGGAAAATGTCTTCGGATGATAAAAGAAAACTCTCGACAGCTCTCTCGCAGTTATCTGCCGAAGATCTGAGCAAGGCTCTAGAAATTGTTGCACAGAGTAACCCCAACTTCCAAGCAACTGCGCAAGAAGTGGATCTTGACATTGATGCTCAGAATGAATGCACATTATGGAGGTTAAAGGTTTTTGTAAAGGAGGCACTAAAAGTTCAGGGGAAAAGTCCTGAAGCCATTGGCGGTAAAGTCCAGGGGAAGATTTCTGAAGCCATTGGTGGCAACAAAGTTGCAGGCTCCAAGCGGAATAGAGAGATTTGTGATACTCTTGCTAAGACTGCCGTAAGGAGGACCAAAAAGATCTCTAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

289

Amino Acids

33.06

Weight (kDa)

8.23

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	624
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	2 cut(s)	735, 796
AclWI	GGATC	4 cut(s)	71, 84, 438, 642
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	744, 780
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	840
AgsI	TTSAA	6 cut(s)	56, 92, 232, 295, 305, 341
AjnI	CCWGG	1 cut(s)	744
AluBI	AGCT	6 cut(s)	10, 52, 322, 425, 445, 542
AluI	AGCT	6 cut(s)	10, 52, 322, 425, 445, 542
AlwI	GGATC	4 cut(s)	71, 84, 438, 642
AoxI	GGCC	2 cut(s)	65, 279
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	18, 625
AspS9I	GGNCC	4 cut(s)	66, 139, 280, 843
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	139, 843
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	170, 271
BceAI	ACGGC	2 cut(s)	395, 818
BciT130I	CCWGG	1 cut(s)	746
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	81
BglII	AGATCT	2 cut(s)	565, 852
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	139, 843
BmgT120I	GGNCC	4 cut(s)	66, 139, 280, 843
BmiI	GGNNCC	4 cut(s)	78, 148, 473, 790
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	2 cut(s)	394, 637
BpiI	GAAGAC	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	4 cut(s)	135, 142, 171, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	840
Bse3DI	GCAATG	3 cut(s)	36, 246, 445
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	4 cut(s)	135, 142, 171, 745
BseGI	GGATG	4 cut(s)	181, 271, 409, 523
BseLI	CCNNNNNNNGG	1 cut(s)	840
BseMI	GCAATG	3 cut(s)	36, 246, 445
BseMII	CTCAG	4 cut(s)	413, 490, 560, 665
BseXI	GCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	67, 281
BshNI	GGYRCC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	840
BsmI	GAATGC	2 cut(s)	241, 665
BsnI	GGCC	2 cut(s)	67, 281
Bsp143I	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	735, 796
BspANI	GGCC	2 cut(s)	67, 281
BspCNI	CTCAG	4 cut(s)	412, 489, 561, 664
BspLI	GGNNCC	4 cut(s)	78, 148, 473, 790
BspPI	GGATC	4 cut(s)	71, 84, 438, 642
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	3 cut(s)	36, 246, 445
BssECI	CCNNGG	4 cut(s)	135, 142, 171, 745
BssMI	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
BssT1I	CCWWGG	3 cut(s)	135, 142, 171
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	418, 787
BstDEI	CTNAG	8 cut(s)	48, 399, 426, 434, 476, 569, 651, 825
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	181, 271, 409, 523
BstHHI	GCGC	2 cut(s)	18, 625
BstKTI	GATC	6 cut(s)	45, 79, 433, 568, 637, 855
BstMBI	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 413, 422, 830
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	744
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	5 cut(s)	76, 430, 565, 634, 852
BstYI	RGATCY	5 cut(s)	76, 430, 565, 634, 852
BsuRI	GGCC	2 cut(s)	67, 281
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	181, 271, 409, 523
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	418, 787
CfoI	GCGC	2 cut(s)	18, 625
Cfr13I	GGNCC	4 cut(s)	66, 139, 280, 843
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	107, 136, 388
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	8 cut(s)	48, 399, 426, 434, 476, 569, 651, 825
DpnI	GATC	6 cut(s)	44, 78, 432, 567, 636, 854
DpnII	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	3 cut(s)	135, 142, 171
Eco47I	GGWCC	2 cut(s)	139, 843
Eco57I	CTGAAG	2 cut(s)	744, 780
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	3 cut(s)	135, 142, 171
ErhI	CCWWGG	3 cut(s)	135, 142, 171
FaeI	CATG	3 cut(s)	110, 139, 391
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	3 cut(s)	106, 135, 387
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	4 cut(s)	188, 278, 416, 530
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	581
FspI	TGCGCA	1 cut(s)	624
GlaI	GCGC	2 cut(s)	17, 624
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	67, 281
HhaI	GCGC	2 cut(s)	18, 625
Hin1II	CATG	3 cut(s)	110, 139, 391
Hin6I	GCGC	2 cut(s)	16, 623
HinP1I	GCGC	2 cut(s)	16, 623
HindIII	AAGCTT	2 cut(s)	50, 320
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	7 cut(s)	42, 479, 495, 517, 570, 654, 760
Hpy188III	TCNNGA	6 cut(s)	232, 401, 535, 581, 638, 722
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 413, 422, 830
HpyF3I	CTNAG	8 cut(s)	48, 399, 426, 434, 476, 569, 651, 825
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	110, 139, 391
HspAI	GCGC	2 cut(s)	16, 623
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	394, 637
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	6 cut(s)	44, 78, 432, 567, 636, 854
MboI	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
MboII	GAAGA	5 cut(s)	317, 353, 504, 575, 763
MflI	RGATCY	5 cut(s)	76, 430, 565, 634, 852
MluCI	AATT	3 cut(s)	20, 299, 585
MseI	TTAA	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	746
Mva1269I	GAATGC	2 cut(s)	241, 665
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	4 cut(s)	388, 413, 422, 830
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
NlaIII	CATG	3 cut(s)	110, 139, 391
NlaIV	GGNNCC	4 cut(s)	78, 148, 473, 790
NsbI	TGCGCA	1 cut(s)	624
NspI	RCATGY	1 cut(s)	391
PctI	GAATGC	2 cut(s)	241, 665
PkrI	GCNGC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	4 cut(s)	78, 148, 473, 790
PspPI	GGNCC	4 cut(s)	66, 139, 280, 843
PsuI	RGATCY	5 cut(s)	76, 430, 565, 634, 852
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	6 cut(s)	42, 76, 430, 565, 634, 852
Sau96I	GGNCC	4 cut(s)	66, 139, 280, 843
ScrFI	CCNGG	1 cut(s)	746
SfaNI	GCATC	2 cut(s)	394, 637
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	139, 843
Sse9I	AATT	3 cut(s)	20, 299, 585
SsiI	CCGC	2 cut(s)	735, 796
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	3 cut(s)	135, 142, 171
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	20, 299, 585
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	257, 270, 672
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	2 cut(s)	139, 843
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.