Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

16328162 .. 16332414

Gene Structure 4253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG172800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACATTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCGTGGCCCTTTATGTCGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACGGTACAAAGTAAAATGGAAACTGGTGGGTATAAGAGTGTTAGAGAGATATATGCTGATGTGAGGTTGGTATTCAAGAACGCAATCAAATACAATGATGACAAAGATGATGTCCACGTGATGGCCCAAACACTGTTGGAAAAATTAGAAGAAAAGTGGCTACAACTCTTGCCTAAAGTTGTTGAAGAGGAGAAAAGACAAGCAGATGAGGAAGCACAGGCACAGGTAGACATGAAACACGCTGAGGAGGTTGCTTATGCCAGCATGGCCAAGGATCTAAGCAGCGAGCTTTTTGAGATTGATAAGTATTTGAAAGATCTCAAAAAAGTGGTGGTTCAGAAGTGCAGGTTTGTTCATTGTTTTTTTTTATATTTTATTTTTAATTTTTTTTTATATCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

270

Amino Acids

31.54

Weight (kDa)

6.47

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	96 - 179	8.8e-20	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	744
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	3 cut(s)	47, 246, 288
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	72
AcvI	CACGTG	1 cut(s)	526
AfaI	GTAC	2 cut(s)	409, 414
AfiI	CCNNNNNNNGG	3 cut(s)	174, 409, 529
AgsI	TTSAA	6 cut(s)	277, 298, 353, 484, 593, 721
AluBI	AGCT	1 cut(s)	697
AluI	AGCT	1 cut(s)	697
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	690
AoxI	GGCC	3 cut(s)	326, 531, 675
ApeKI	GCWGC	5 cut(s)	217, 230, 248, 251, 690
ApoI	RAATTY	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspS9I	GGNCC	3 cut(s)	327, 400, 532
AvaII	GGWCC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	677
BbrPI	CACGTG	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	5 cut(s)	229, 235, 238, 242, 702
BccI	CCATC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	744
BglI	GCCNNNNNGGC	1 cut(s)	674
BglII	AGATCT	2 cut(s)	268, 724
BisI	GCNGC	7 cut(s)	48, 218, 231, 246, 249, 252, 691
BlsI	GCNGC	7 cut(s)	49, 219, 232, 247, 250, 253, 692
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	327, 400, 532
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	128, 163
BsaAI	YACGTR	2 cut(s)	236, 526
BsaJI	CCNNGG	3 cut(s)	396, 403, 678
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 409, 529
Bse1I	ACTGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	396, 403, 678
BseLI	CCNNNNNNNGG	3 cut(s)	174, 409, 529
BseMII	CTCAG	2 cut(s)	323, 642
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	611, 668
BseXI	GCAGC	5 cut(s)	229, 235, 238, 242, 702
BsgI	GTGCAG	1 cut(s)	772
BshFI	GGCC	3 cut(s)	328, 533, 677
BsiHKAI	GWGCWC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	174, 409, 529
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	328, 533, 677
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	268, 303, 682, 724
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	47, 246, 288
BspANI	GGCC	3 cut(s)	328, 533, 677
BspCNI	CTCAG	2 cut(s)	322, 643
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	396, 403, 678
BssMI	GATC	4 cut(s)	268, 303, 682, 724
BssT1I	CCWWGG	3 cut(s)	396, 403, 678
Bst4CI	ACNGT	2 cut(s)	412, 543
Bst6I	CTCTTC	1 cut(s)	588
BstBAI	YACGTR	2 cut(s)	236, 526
BstC8I	GCNNGC	2 cut(s)	670, 695
BstDEI	CTNAG	3 cut(s)	309, 651, 686
BstDSI	CCRYGG	1 cut(s)	396
BstKTI	GATC	4 cut(s)	271, 306, 685, 727
BstMBI	GATC	4 cut(s)	268, 303, 682, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 674
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	5 cut(s)	229, 235, 238, 242, 702
BstX2I	RGATCY	3 cut(s)	268, 682, 724
BstYI	RGATCY	3 cut(s)	268, 682, 724
BsuRI	GGCC	3 cut(s)	328, 533, 677
BtgI	CCRYGG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	2 cut(s)	670, 695
Cfr13I	GGNCC	3 cut(s)	327, 400, 532
Csp6I	GTAC	2 cut(s)	408, 413
CviAII	CATG	5 cut(s)	368, 397, 640, 673, 806
CviJI	RGCY	9 cut(s)	7, 50, 245, 328, 394, 533, 568, 677, 697
CviKI_1	RGCY	9 cut(s)	7, 50, 245, 328, 394, 533, 568, 677, 697
CviQI	GTAC	2 cut(s)	408, 413
DdeI	CTNAG	3 cut(s)	309, 651, 686
DpnI	GATC	4 cut(s)	270, 305, 684, 726
DpnII	GATC	4 cut(s)	268, 303, 682, 724
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	3 cut(s)	396, 403, 678
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	72
Eco72I	CACGTG	1 cut(s)	526
EcoT14I	CCWWGG	3 cut(s)	396, 403, 678
ErhI	CCWWGG	3 cut(s)	396, 403, 678
FaeI	CATG	5 cut(s)	371, 400, 643, 676, 809
FatI	CATG	5 cut(s)	367, 396, 639, 672, 805
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	7 cut(s)	48, 218, 231, 246, 249, 252, 691
Fsp4HI	GCNGC	7 cut(s)	48, 218, 231, 246, 249, 252, 691
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	7 cut(s)	48, 218, 231, 246, 249, 252, 691
HaeIII	GGCC	3 cut(s)	328, 533, 677
Hin1II	CATG	5 cut(s)	371, 400, 643, 676, 809
HinfI	GANTC	2 cut(s)	29, 71
Hpy166II	GTNNAC	2 cut(s)	523, 637
Hpy188I	TCNGA	1 cut(s)	747
Hpy188III	TCNNGA	3 cut(s)	33, 68, 484
Hpy8I	GTNNAC	2 cut(s)	523, 637
HpyCH4III	ACNGT	2 cut(s)	412, 543
HpyCH4IV	ACGT	2 cut(s)	235, 525
HpyCH4V	TGCA	5 cut(s)	160, 230, 254, 367, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 674
HpyF3I	CTNAG	3 cut(s)	309, 651, 686
HpySE526I	ACGT	2 cut(s)	235, 525
Hsp92II	CATG	5 cut(s)	371, 400, 643, 676, 809
Kzo9I	GATC	4 cut(s)	268, 303, 682, 724
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	39, 172, 344, 354, 417, 611, 617, 682, 739
Lsp1109I	GCAGC	5 cut(s)	229, 235, 238, 242, 702
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	235, 525
MalI	GATC	4 cut(s)	270, 305, 684, 726
MboI	GATC	4 cut(s)	268, 303, 682, 724
MboII	GAAGA	3 cut(s)	286, 569, 605
MflI	RGATCY	3 cut(s)	268, 682, 724
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	3 cut(s)	84, 551, 790
MluNI	TGGCCA	1 cut(s)	677
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	9 cut(s)	52, 118, 138, 168, 465, 589, 610, 646, 649
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	4 cut(s)	99, 201, 210, 789
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	251, 674
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	268, 303, 682, 724
NlaIII	CATG	5 cut(s)	371, 400, 643, 676, 809
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	29, 71
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	7 cut(s)	49, 219, 232, 247, 250, 253, 692
PmaCI	CACGTG	1 cut(s)	526
PmlI	CACGTG	1 cut(s)	526
Ppu21I	YACGTR	2 cut(s)	236, 526
PspCI	CACGTG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	327, 400, 532
PsuI	RGATCY	3 cut(s)	268, 682, 724
RsaI	GTAC	2 cut(s)	409, 414
RsaNI	GTAC	2 cut(s)	408, 413
SaqAI	TTAA	4 cut(s)	99, 201, 210, 789
SatI	GCNGC	7 cut(s)	48, 218, 231, 246, 249, 252, 691
Sau3AI	GATC	4 cut(s)	268, 303, 682, 724
Sau96I	GGNCC	3 cut(s)	327, 400, 532
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	129, 238, 405, 476, 528, 636, 660, 699, 758
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	107, 142
SmoI	CTYRAG	2 cut(s)	107, 142
Sse9I	AATT	3 cut(s)	84, 551, 790
SsiI	CCGC	3 cut(s)	47, 246, 288
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	3 cut(s)	396, 403, 678
TaaI	ACNGT	2 cut(s)	412, 543
TaiI	ACGT	2 cut(s)	238, 528
TaqI	TCGA	2 cut(s)	129, 173
TasI	AATT	3 cut(s)	84, 551, 790
TauI	GCSGC	2 cut(s)	50, 248
TfiI	GAWTC	2 cut(s)	29, 71
Tru1I	TTAA	4 cut(s)	99, 201, 210, 789
Tru9I	TTAA	4 cut(s)	99, 201, 210, 789
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	5 cut(s)	217, 230, 248, 251, 690
TspDTI	ATGAA	4 cut(s)	6, 96, 656, 752
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	84
XbaI	TCTAGA	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.