Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Forward (+)

16204482 .. 16208425

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTTGGGCCTAAACTCATCTCTGAGACTCACTATGCATCTCAGTCCCTACAGTTGCAGATGGAGCCAATGAGTTCATCAAACCCAGATTCTAGAAGCGTTGGTGCGGCTGAAGTGGAGGGTTTTCGGGATTCTGTCAATGAAATTTCAGCAAAAGTTAATACGCTTGAGAAAAGAGTGAATGAGGTCGAGCACTATTACTTGAGGAAAGGCAGTCTGCAACCAACCACTTCGAGGGAGAAAGACAGGGATAAACATTTTAACACCATTAAGAAGCAGCAACAAGATGCAGCACGTAGGGAAGCCGCTGCTGCAAAGAGAATGCGAGATCTGTTGAATAAGTTTTCCGCAATCTTCAAACAGATCACTCAGCACAAGTGGTCGTGGCCCTTTATGTCGCCTGTAGATGTTGAAAGTCTGGGATTGCATGACTATTATCAAGTTATTGAGAAGCCCATGGACCTTGGTACGCAGCATGTGCATGGCCTACGACTTGGGACAGCTCTTACACAGTTATCTCCTGAAGATCTCAGCAAGGCTTTGGATATAGTTGCTCAGGATAATCCCGAGTTCCAAGCAACTGCGCAAGAGGTGGATCTTGACATTGATACTCAGAGCGACTACACATTATGGAGGTTAAAGGTTTTTGTCAAGGATGCATTAAAAGTTAAGGCCCAAGTTGCTGCACAAATTCCTGAAGCCATGGGTGGCAACAAAGTTGCAACCTCCAAAAGAAATAGGGAGCCCTCTGATGCTGTTGCCAAGCCTGCCGTTAAACGAACTAAAAAAATCTCCACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

267

Amino Acids

30.1

Weight (kDa)

9.05

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BET	PF17035	164 - 219	2.1e-14	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	585
AciI	CCGC	3 cut(s)	107, 306, 348
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	2 cut(s)	144, 690
AcuI	CTGAAG	3 cut(s)	132, 543, 717
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	337, 358, 413
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	8, 386, 484, 672
ApeKI	GCWGC	6 cut(s)	277, 290, 308, 311, 472, 683
ApoI	RAATTY	2 cut(s)	144, 690
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	4 cut(s)	8, 387, 460, 673
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	6 cut(s)	289, 295, 298, 302, 484, 670
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	2 cut(s)	50, 402
BglII	AGATCT	2 cut(s)	328, 526
BisI	GCNGC	8 cut(s)	108, 278, 291, 306, 309, 312, 473, 684
BlsI	GCNGC	8 cut(s)	109, 279, 292, 307, 310, 313, 474, 685
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	4 cut(s)	8, 387, 460, 673
BmiI	GGNNCC	2 cut(s)	66, 744
BmsI	GCATC	4 cut(s)	47, 277, 646, 742
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	188, 223
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	456, 463, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	456, 463, 702
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	6 cut(s)	15, 56, 383, 544, 569, 626
BseXI	GCAGC	6 cut(s)	289, 295, 298, 302, 484, 670
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	4 cut(s)	10, 388, 486, 674
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	566
BslFI	GGGAC	2 cut(s)	31, 511
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	2 cut(s)	31, 511
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	4 cut(s)	10, 388, 486, 674
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	195, 747
Bsp143I	GATC	4 cut(s)	328, 363, 526, 595
Bsp19I	CCATGG	2 cut(s)	456, 702
BspACI	CCGC	3 cut(s)	107, 306, 348
BspANI	GGCC	4 cut(s)	10, 388, 486, 674
BspCNI	CTCAG	6 cut(s)	16, 55, 382, 543, 568, 625
BspLI	GGNNCC	2 cut(s)	66, 744
BspPI	GGATC	1 cut(s)	603
BssECI	CCNNGG	3 cut(s)	456, 463, 702
BssMI	GATC	4 cut(s)	328, 363, 526, 595
BssT1I	CCWWGG	3 cut(s)	456, 463, 702
Bst4CI	ACNGT	2 cut(s)	54, 513
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	6 cut(s)	24, 42, 369, 530, 555, 612
BstDSI	CCRYGG	2 cut(s)	456, 702
BstF5I	GGATG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	331, 366, 529, 598
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	4 cut(s)	328, 363, 526, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 311, 478, 680, 767
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	50, 402
BstV1I	GCAGC	6 cut(s)	289, 295, 298, 302, 484, 670
BstX2I	RGATCY	3 cut(s)	328, 526, 595
BstYI	RGATCY	3 cut(s)	328, 526, 595
BsuRI	GGCC	4 cut(s)	10, 388, 486, 674
BtgI	CCRYGG	2 cut(s)	456, 702
BtsCI	GGATG	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	768
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	4 cut(s)	8, 387, 460, 673
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	5 cut(s)	428, 457, 476, 482, 703
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	6 cut(s)	24, 42, 369, 530, 555, 612
DpnI	GATC	4 cut(s)	330, 365, 528, 597
DpnII	GATC	4 cut(s)	328, 363, 526, 595
Eco130I	CCWWGG	3 cut(s)	456, 463, 702
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	3 cut(s)	132, 543, 717
Eco88I	CYCGRG	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	456, 463, 702
EcoT22I	ATGCAT	2 cut(s)	40, 661
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	3 cut(s)	456, 463, 702
FaeI	CATG	5 cut(s)	431, 460, 479, 485, 706
FaqI	GGGAC	2 cut(s)	31, 511
FatI	CATG	5 cut(s)	427, 456, 475, 481, 702
Fnu4HI	GCNGC	8 cut(s)	108, 278, 291, 306, 309, 312, 473, 684
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	8 cut(s)	108, 278, 291, 306, 309, 312, 473, 684
FspBI	CTAG	1 cut(s)	93
FspI	TGCGCA	1 cut(s)	585
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	8 cut(s)	108, 278, 291, 306, 309, 312, 473, 684
HaeIII	GGCC	4 cut(s)	10, 388, 486, 674
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	431, 460, 479, 485, 706
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	28, 89, 131
Hpy188I	TCNGA	3 cut(s)	25, 615, 751
Hpy188III	TCNNGA	7 cut(s)	93, 128, 521, 557, 566, 599, 695
HpyCH4III	ACNGT	2 cut(s)	54, 513
HpyCH4IV	ACGT	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 311, 478, 680, 767
HpyF3I	CTNAG	6 cut(s)	24, 42, 369, 530, 555, 612
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	5 cut(s)	431, 460, 479, 485, 706
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	4 cut(s)	328, 363, 526, 595
LmnI	GCTCC	2 cut(s)	64, 742
LpnPI	CCDG	8 cut(s)	99, 232, 404, 414, 534, 542, 708, 780
Lsp1109I	GCAGC	6 cut(s)	289, 295, 298, 302, 484, 670
LweI	GCATC	4 cut(s)	47, 277, 646, 742
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	295
MalI	GATC	4 cut(s)	330, 365, 528, 597
MboI	GATC	4 cut(s)	328, 363, 526, 595
MboII	GAAGA	2 cut(s)	346, 536
MflI	RGATCY	3 cut(s)	328, 526, 595
MhlI	GDGCHC	2 cut(s)	195, 747
MluCI	AATT	2 cut(s)	144, 690
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	8 cut(s)	112, 178, 198, 228, 583, 627, 736, 757
Mph1103I	ATGCAT	2 cut(s)	40, 661
MseI	TTAA	7 cut(s)	159, 261, 270, 638, 662, 669, 774
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	64, 311, 478, 680, 767
NcoI	CCATGG	2 cut(s)	456, 702
NdeII	GATC	4 cut(s)	328, 363, 526, 595
NlaIII	CATG	5 cut(s)	431, 460, 479, 485, 706
NlaIV	GGNNCC	2 cut(s)	66, 744
NsbI	TGCGCA	1 cut(s)	585
NsiI	ATGCAT	2 cut(s)	40, 661
NspI	RCATGY	1 cut(s)	479
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	89, 131
PkrI	GCNGC	8 cut(s)	109, 279, 292, 307, 310, 313, 474, 685
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	66, 744
PspPI	GGNCC	4 cut(s)	8, 387, 460, 673
PsuI	RGATCY	3 cut(s)	328, 526, 595
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	7 cut(s)	159, 261, 270, 638, 662, 669, 774
SatI	GCNGC	8 cut(s)	108, 278, 291, 306, 309, 312, 473, 684
Sau3AI	GATC	4 cut(s)	328, 363, 526, 595
Sau96I	GGNCC	4 cut(s)	8, 387, 460, 673
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	195, 747
SetI	ASST	8 cut(s)	189, 298, 465, 505, 594, 638, 645, 728
SfaNI	GCATC	4 cut(s)	47, 277, 646, 742
SfcI	CTRYAG	2 cut(s)	50, 402
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	167, 202
SmoI	CTYRAG	2 cut(s)	167, 202
Sse9I	AATT	2 cut(s)	144, 690
SsiI	CCGC	3 cut(s)	107, 306, 348
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	3 cut(s)	456, 463, 702
TaaI	ACNGT	2 cut(s)	54, 513
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	189, 233
TasI	AATT	2 cut(s)	144, 690
TauI	GCSGC	2 cut(s)	110, 308
TfiI	GAWTC	2 cut(s)	89, 131
Tru1I	TTAA	7 cut(s)	159, 261, 270, 638, 662, 669, 774
Tru9I	TTAA	7 cut(s)	159, 261, 270, 638, 662, 669, 774
TseI	GCWGC	6 cut(s)	277, 290, 308, 311, 472, 683
TspDTI	ATGAA	2 cut(s)	66, 156
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	2 cut(s)	144, 690
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	93
Zsp2I	ATGCAT	2 cut(s)	40, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.