Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001287

Physical Location & Seq

Genomic Coordinates Reverse (-)

24711654 .. 24715562

Gene Structure 3909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGCAAATGGAGGAGCCAATTTTAGATGCCATATATGGTGGAGCTGTAAATTTTACTGACAATGGTGCAGAAGCAGAGTCTTTCAAGCATCGGGTTGATGAAATTTTCGTAAAAGTTGATAAGCTTGAGCAAAGAGTGAATGAGATAGAGCAGTCGAGTAAAAAACAGCCGAATGCATGTAAAAGTAGCTCAACTGTGAAGGATAAAGACAAACATATCCCAAGTATGAAGAAGCAGCAGCAGGATGCAGCATGTAGGGAAGCAGCTTCTGCAAAGAGAATGCAGGAACTTATGCGCCACTTTGGCACAATATTGCGTCAGATTACACAACACAAGTGGGCATGGCCCTTTTTGCAACCTGTAGATGTAGAAGGTCTTGGTTTACATGACTATTACAAGGTTATTGACAAGCCAATGGACTTCAGTACAATTAAAAACCAAATGGAGGCCAAGGATGGTACTGGATATAAAAACGTTCGGGAGATATGTGCTGATGTGAGATTAGTCTTCAAAAACGCGATGAAATATAATGATGAGAGAAGTGATGTTCATGTTATGGCCAAAACTTTGATGGCGAAATTTGAGGAGAAGTGGCTGCAGCTTCTTCCTAAAGTTACTGAAGAGGAAAAAAGGCTAGAAGAAGAGGAGGCTGAAGCACAGTTAAAAATGCAGCTTGCTGAAGAGGCTGCTCGTGCCAAAATGGCTAGAGATTTAAGTAACGAGCTTTATGAGGTTGATATGCATTTGGAAGAACTCCGAGAAATGGTTGTTCAGAAGTGCAGAAAAATGTCGACTGAAGAAAAGAGAAAACTTGGGGTAGCCCTTACCAGATTGTCGCCTGAGGATCTCAGCAAGGCATTAGATATTGTTGCACAAAATAATCCAGGTTTCCAGGCTACTGCTGATGAGGTGGACCTTGACATTGATGCTCAGACTGAGTCTACCTTGTGGAGGTTGAAGTTTTTTGTGAAGGATGCTATAGAAGTTCAAGGCAAGAGTTCGGCCAGCATGGGCGGCAACACCAATACCAACACTAATAACCACAACAGCGGCAACAAAACTAATAACAATCTCACCAATGCTACAAATAAGCGAAAAAGAGAGATTTCTGATGCTATCGTCAAAACTGCCAAGAAAAAGAATAAAAAGCCATCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

388

Amino Acids

44.17

Weight (kDa)

6.75

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34900 AT2G34900
fragaria_vesca	FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_3g13380 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980 FvH4_7g19980
malus_domestica	MD01G1111300.v1.1 MD06G1168600.v1.1 MD08G1151100.v1.1 MD08G1172000.v1.1 MD10G1224000.v1.1 MD12G1128700.v1.1 MD13G1214300.v1.1
prunus_persica	Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.2G216800_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1 Prupe.4G121200_v2.0.a1
pyrus_communis	pycom01g13870 pycom10g18800
rosa_chinensis	RchiOBHm_Chr1g0363941 RchiOBHm_Chr5g0022091
rosa_laevigata	RLG00000032643
rosa_multiflora	Rmu_co8422649.1_g000001 Rmu_sc0012801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056840 Rroxscaffold_4G00292820
rosa_rugosa	Rorug01G0311400 Rorug01G0311500 Rorug05G0071200
rosa_samantha	Rh1AG319300 Rh1BG282300 Rh1CG298800 Rh1DG313700 Rh5AG159100 Rh5BG158400 Rh5CG172800 Rh5DG158600
rosa_wichuraiana	Rw1G028300 Rw1G028310 Rw5G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	794, 944
AccII	CGCG	1 cut(s)	521
AciI	CCGC	2 cut(s)	1017, 1053
AclI	AACGTT	1 cut(s)	477
AclWI	GGATC	1 cut(s)	855
AcoI	YGGCCR	2 cut(s)	561, 1005
AcsI	RAATTY	3 cut(s)	52, 105, 581
AcuI	CTGAAG	5 cut(s)	409, 642, 675, 702, 819
AfaI	GTAC	2 cut(s)	430, 463
AfiI	CCNNNNNNNGG	3 cut(s)	448, 766, 954
AgsI	TTSAA	4 cut(s)	88, 514, 961, 992
AjnI	CCWGG	2 cut(s)	886, 894
AluBI	AGCT	7 cut(s)	47, 127, 192, 269, 604, 676, 727
AluI	AGCT	7 cut(s)	47, 127, 192, 269, 604, 676, 727
AlwI	GGATC	1 cut(s)	855
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	347, 450, 561, 1005
ApeKI	GCWGC	8 cut(s)	238, 241, 251, 266, 598, 601, 673, 689
ApoI	RAATTY	3 cut(s)	52, 105, 581
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	348, 916
AsuHPI	GGTGA	1 cut(s)	1069
AvaII	GGWCC	1 cut(s)	916
AxyI	CCTNAGG	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	563
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	8 cut(s)	250, 253, 263, 278, 585, 613, 676, 685
BccI	CCATC	3 cut(s)	452, 568, 1162
BciT130I	CCWGG	2 cut(s)	888, 896
BfaI	CTAG	2 cut(s)	638, 708
BfmI	CTRYAG	3 cut(s)	363, 599, 981
BglI	GCCNNNNNGGC	2 cut(s)	306, 704
Bme1390I	CCNGG	2 cut(s)	888, 896
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	2 cut(s)	348, 916
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	888, 896
BmsI	GCATC	6 cut(s)	19, 100, 238, 919, 967, 1105
BpiI	GAAGAC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 766, 954
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	888, 896
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	253, 463, 982
BseLI	CCNNNNNNNGG	3 cut(s)	448, 766, 954
BseMII	CTCAG	4 cut(s)	834, 865, 930, 947
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	3 cut(s)	29, 602, 662
BseXI	GCAGC	8 cut(s)	250, 253, 263, 278, 585, 613, 676, 685
BsgI	GTGCAG	2 cut(s)	90, 802
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	4 cut(s)	349, 452, 563, 1007
BslI	CCNNNNNNNGG	3 cut(s)	448, 766, 954
BsmI	GAATGC	2 cut(s)	181, 288
BsnI	GGCC	4 cut(s)	349, 452, 563, 1007
Bsp143I	GATC	1 cut(s)	847
BspACI	CCGC	2 cut(s)	1017, 1053
BspANI	GGCC	4 cut(s)	349, 452, 563, 1007
BspCNI	CTCAG	4 cut(s)	835, 864, 931, 946
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	1 cut(s)	847
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	888, 896
Bst4CI	ACNGT	2 cut(s)	199, 663
Bst6I	CTCTTC	3 cut(s)	618, 639, 678
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	678, 1009
BstDEI	CTNAG	4 cut(s)	843, 851, 933, 939
BstENI	CCTNNNNNAGG	1 cut(s)	952
BstF5I	GGATG	3 cut(s)	253, 463, 982
BstFNI	CGCG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	850
BstMBI	GATC	1 cut(s)	847
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 306, 355, 686, 695, 704, 1017
BstNI	CCWGG	2 cut(s)	888, 896
BstNSI	RCATGY	2 cut(s)	183, 258
BstSCI	CCNGG	2 cut(s)	886, 894
BstSFI	CTRYAG	3 cut(s)	363, 599, 981
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	8 cut(s)	250, 253, 263, 278, 585, 613, 676, 685
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
Bsu36I	CCTNAGG	1 cut(s)	843
BsuRI	GGCC	4 cut(s)	349, 452, 563, 1007
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	253, 463, 982
Cac8I	GCNNGC	2 cut(s)	678, 1009
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	348, 916
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	429, 462
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	6 cut(s)	180, 255, 345, 389, 554, 1012
CviQI	GTAC	2 cut(s)	429, 462
DdeI	CTNAG	4 cut(s)	843, 851, 933, 939
DpnI	GATC	1 cut(s)	849
DpnII	GATC	1 cut(s)	847
EaeI	YGGCCR	2 cut(s)	561, 1005
Eam1104I	CTCTTC	3 cut(s)	618, 639, 678
EarI	CTCTTC	3 cut(s)	618, 639, 678
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	916
Eco57I	CTGAAG	5 cut(s)	409, 642, 675, 702, 819
Eco81I	CCTNAGG	1 cut(s)	843
EcoNI	CCTNNNNNAGG	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	886, 894
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	2 cut(s)	181, 747
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	6 cut(s)	183, 258, 348, 392, 557, 1015
FatI	CATG	6 cut(s)	179, 254, 344, 388, 553, 1011
FblI	GTMKAC	2 cut(s)	794, 944
FokI	GGATG	3 cut(s)	260, 470, 989
FspBI	CTAG	2 cut(s)	638, 708
GlaI	GCGC	1 cut(s)	299
HaeIII	GGCC	4 cut(s)	349, 452, 563, 1007
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	6 cut(s)	183, 258, 348, 392, 557, 1015
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	80, 941
HphI	GGTGA	1 cut(s)	1069
Hpy166II	GTNNAC	4 cut(s)	386, 795, 916, 945
Hpy188I	TCNGA	5 cut(s)	324, 761, 777, 936, 1114
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	4 cut(s)	386, 795, 916, 945
HpyAV	CCTTC	3 cut(s)	196, 368, 967
HpyCH4III	ACNGT	2 cut(s)	199, 663
HpyCH4IV	ACGT	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 306, 355, 686, 695, 704, 1017
HpyF3I	CTNAG	4 cut(s)	843, 851, 933, 939
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	183, 258, 348, 392, 557, 1015
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	847
LmnI	GCTCC	3 cut(s)	4, 16, 44
Lsp1109I	GCAGC	8 cut(s)	250, 253, 263, 278, 585, 613, 676, 685
LweI	GCATC	6 cut(s)	19, 100, 238, 919, 967, 1105
MaeI	CTAG	2 cut(s)	638, 708
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	616, 719
MalI	GATC	1 cut(s)	849
MboI	GATC	1 cut(s)	847
MboII	GAAGA	9 cut(s)	244, 502, 599, 635, 653, 656, 695, 764, 812
MflI	RGATCY	1 cut(s)	847
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	5 cut(s)	21, 52, 105, 432, 581
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	89, 950
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	2 cut(s)	181, 747
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	435, 665, 716
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	1053
MspR9I	CCNGG	2 cut(s)	888, 896
Mva1269I	GAATGC	2 cut(s)	181, 288
MvaI	CCWGG	2 cut(s)	888, 896
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	7 cut(s)	272, 306, 355, 686, 695, 704, 1017
NdeII	GATC	1 cut(s)	847
NlaIII	CATG	6 cut(s)	183, 258, 348, 392, 557, 1015
NlaIV	GGNNCC	1 cut(s)	18
NsiI	ATGCAT	2 cut(s)	181, 747
NspI	RCATGY	2 cut(s)	183, 258
PctI	GAATGC	2 cut(s)	181, 288
PflFI	GACNNNGTC	1 cut(s)	940
PleI	GAGTC	2 cut(s)	88, 949
PpsI	GAGTC	2 cut(s)	88, 949
Psp1406I	AACGTT	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	886, 894
PspGI	CCWGG	2 cut(s)	886, 894
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	348, 916
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	847
PsyI	GACNNNGTC	1 cut(s)	940
RsaI	GTAC	2 cut(s)	430, 463
RsaNI	GTAC	2 cut(s)	429, 462
SalI	GTCGAC	1 cut(s)	793
SaqAI	TTAA	3 cut(s)	435, 665, 716
Sau3AI	GATC	1 cut(s)	847
Sau96I	GGNCC	2 cut(s)	348, 916
SchI	GAGTC	2 cut(s)	89, 950
ScrFI	CCNGG	2 cut(s)	888, 896
SfaNI	GCATC	6 cut(s)	19, 100, 238, 919, 967, 1105
SfcI	CTRYAG	3 cut(s)	363, 599, 981
SinI	GGWCC	1 cut(s)	916
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	21, 52, 105, 432, 581
SsiI	CCGC	2 cut(s)	1017, 1053
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	638, 708
StyD4I	CCNGG	2 cut(s)	886, 894
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	199, 663
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	158, 794
TasI	AATT	5 cut(s)	21, 52, 105, 432, 581
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	2 cut(s)	1020, 1056
Tru1I	TTAA	3 cut(s)	435, 665, 716
Tru9I	TTAA	3 cut(s)	435, 665, 716
TseI	GCWGC	8 cut(s)	238, 241, 251, 266, 598, 601, 673, 689
TspDTI	ATGAA	4 cut(s)	117, 245, 539, 542
Tth111I	GACNNNGTC	1 cut(s)	940
VpaK11BI	GGWCC	1 cut(s)	916
XagI	CCTNNNNNAGG	1 cut(s)	952
XapI	RAATTY	3 cut(s)	52, 105, 581
XceI	RCATGY	2 cut(s)	183, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	794, 944
XspI	CTAG	2 cut(s)	638, 708
Zsp2I	ATGCAT	2 cut(s)	181, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.