AT3G24100

4F5 protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002526
Physical Location & Seq
Forward (+)
8703220 .. 8704311
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24100.1

Sequence Viewer

Length: 210 bp
ATGACTCGAGGAAGTCAAAGAGAGCGTGACCGTGAAAGGGCTCTAGCTCGAACCGGAGGCAAAGGAAAGAACAAAGATGATGGATTAACTCCTGAGCAACGTCGTGAAAGAGATGCAAAAGCATTGCAAGAGAAGACTGCAAAGAAAGCTGCTCAAGCCGCTGCTGCAGCTAGTTCCGGAGGAGGAGGAGGCAAAGGAAACAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5

Protein Analysis

69

Amino Acids

7.25

Weight (kDa)

10.72

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERF-like_N PF04419 1 - 35 2e-11 Small EDRK-rich factor 1/2-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 47, 149, 170
AluI AGCT 3 cut(s) 47, 149, 170
Ama87I CYCGRG 1 cut(s) 6
Aor13HI TCCGGA 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 149, 161, 164, 167
AvaI CYCGRG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 4 cut(s) 136, 148, 151, 179
BccI CCATC 1 cut(s) 74
BfaI CTAG 2 cut(s) 44, 171
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 5 cut(s) 150, 159, 162, 165, 168
BlsI GCNGC 5 cut(s) 151, 160, 163, 166, 169
BmeT110I CYCGRG 1 cut(s) 6
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 53, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 3 cut(s) 195, 198, 201
BseXI GCAGC 4 cut(s) 136, 148, 151, 179
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 54, 177
BslI CCNNNNNNNGG 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 43
Bsp13I TCCGGA 1 cut(s) 176
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 93
BstMWI GCNNNNNNNGC 5 cut(s) 146, 155, 158, 164, 167
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 136, 148, 151, 179
BstV2I GAAGAC 1 cut(s) 140
CviJI RGCY 5 cut(s) 41, 47, 149, 158, 170
CviKI_1 RGCY 5 cut(s) 41, 47, 149, 158, 170
DdeI CTNAG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 43
Fnu4HI GCNGC 5 cut(s) 150, 159, 162, 165, 168
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 150, 159, 162, 165, 168
FspBI CTAG 2 cut(s) 44, 171
GluI GCNGC 5 cut(s) 150, 159, 162, 165, 168
HapII CCGG 2 cut(s) 54, 177
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 54, 177
Hpy188III TCNNGA 3 cut(s) 92, 104, 177
Hpy99I CGWCG 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 116, 127, 140, 167
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 155, 158, 164, 167
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 176
LpnPI CCDG 3 cut(s) 67, 105, 190
Lsp1109I GCAGC 4 cut(s) 136, 148, 151, 179
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 44, 171
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 26
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 5 cut(s) 50, 173, 176, 179, 182
MroI TCCGGA 1 cut(s) 176
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 54, 177
MwoI GCNNNNNNNGC 5 cut(s) 146, 155, 158, 164, 167
NmuCI GTSAC 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 6
PkrI GCNGC 5 cut(s) 151, 160, 163, 166, 169
PspXI VCTCGAGB 1 cut(s) 6
PstI CTGCAG 1 cut(s) 169
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 5 cut(s) 150, 159, 162, 165, 168
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 49, 103, 151, 172
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 6, 153
SmoI CTYRAG 2 cut(s) 6, 153
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 44, 171
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 7, 49
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 4 cut(s) 149, 161, 164, 167
Tsp45I GTSAC 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 2 cut(s) 44, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.