Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Reverse (-)

44906231 .. 44907341

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGACCCGAATCGGGTCGAGGGCAGCAACCGGGTCGTCCAGCTGGGTCGGTCTTCCGGAGCCGGGTTGCCGGTGCAGACGAGTGAATTGACGTCGGAATCCGAAGAGGAATCCGGTCCGAGATCGGTGAGTCTCAAGGGCAGCACCTCGGAAGCGTGCGTGGAAGGGACTGTAGCGCGGCCGGTCTTCTGGGTCGGGCTGAGTAGCGTGCTGGCACGATATTTCAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.16

Weight (kDa)

5.32

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	13, 63
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	24, 141
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	4, 116
AsuC2I	CCSGG	2 cut(s)	32, 64
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	4, 116
BbsI	GAAGAC	2 cut(s)	45, 178
BbvI	GCAGC	2 cut(s)	36, 153
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcnI	CCSGG	2 cut(s)	32, 64
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	25, 142, 179
BlsI	GCNGC	3 cut(s)	26, 143, 180
Bme1390I	CCNGG	2 cut(s)	32, 64
Bme18I	GGWCC	2 cut(s)	4, 116
BmgT120I	GGNCC	2 cut(s)	4, 116
BmiI	GGNNCC	2 cut(s)	6, 61
BmrFI	CCNGG	2 cut(s)	32, 64
BpiI	GAAGAC	2 cut(s)	45, 178
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	32, 64
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	56, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 63
Bse118I	RCCGGY	2 cut(s)	70, 181
BseAI	TCCGGA	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	13, 63
BseMII	CTCAG	1 cut(s)	191
BseX3I	CGGCCG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	36, 153
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	6 cut(s)	31, 57, 63, 71, 114, 182
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	13, 63
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	192
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	6, 61
BsrFI	RCCGGY	2 cut(s)	70, 181
BssAI	RCCGGY	2 cut(s)	70, 181
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	157, 209, 213
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	30, 62
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	36, 153
BstV2I	GAAGAC	2 cut(s)	45, 178
BstZI	CGGCCG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	181
Cac8I	GCNNGC	3 cut(s)	157, 209, 213
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	2 cut(s)	70, 181
Cfr13I	GGNCC	2 cut(s)	4, 116
CpoI	CGGWCCG	1 cut(s)	116
CspI	CGGWCCG	1 cut(s)	116
CviJI	RGCY	4 cut(s)	43, 62, 181, 199
CviKI_1	RGCY	4 cut(s)	43, 62, 181, 199
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	179
EagI	CGGCCG	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	4, 116
Eco52I	CGGCCG	1 cut(s)	179
FaiI	YATR	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	25, 142, 179
Fsp4HI	GCNGC	3 cut(s)	25, 142, 179
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	3 cut(s)	25, 142, 179
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	6 cut(s)	31, 57, 63, 71, 114, 182
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	10, 98, 110, 130
HpaII	CCGG	6 cut(s)	31, 57, 63, 71, 114, 182
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	4 cut(s)	97, 103, 120, 151
Hpy188III	TCNNGA	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	36, 153
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	45, 116, 178
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	13, 100, 157
MroI	TCCGGA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	6 cut(s)	31, 57, 63, 71, 114, 182
MspR9I	CCNGG	2 cut(s)	32, 64
MvnI	CGCG	1 cut(s)	178
NciI	CCSGG	2 cut(s)	32, 64
NdeII	GATC	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	6, 61
PfeI	GAWTC	3 cut(s)	10, 98, 110
PkrI	GCNGC	3 cut(s)	26, 143, 180
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	6, 61
PspPI	GGNCC	2 cut(s)	4, 116
PvuII	CAGCTG	1 cut(s)	43
Rsr2I	CGGWCCG	1 cut(s)	116
RsrII	CGGWCCG	1 cut(s)	116
SatI	GCNGC	3 cut(s)	25, 142, 179
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	4, 116
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	32, 64
SetI	ASST	3 cut(s)	45, 95, 149
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	4, 116
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	30, 62
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	10, 98, 110
TseI	GCWGC	2 cut(s)	24, 141
VpaK11BI	GGWCC	2 cut(s)	4, 116
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.