Rh6AG277400

4F5 protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002526
Physical Location & Seq
Forward (+)
47123855 .. 47128945
5091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG277400.1

Sequence Viewer

Length: 372 bp
ATGAATAAAGCAGGCGGGGTGACAAAGATCATTAGATTGGTAGGTTCTGAACAACTGGTCCTTTATATACCCACCCACCTCTTTTCACTCGCGGACACATTCAACCTTGCTCTGATAGACGAAGGATTACACCCATCTGCGCTCGCATCGGCAATCAGCGAACGCGGTAACCAGAGAGACCGAGATCGCGAAAGGGCTCAGGCCAGGTCCGGCAACAAGACCAAGCAGCCCAAAACCGATGGATTAACCCCTGAACAACGCCGAGAAAGGGACGCCAAGGCGCTGCAGGAAAAGGCGGCAAAGAAGGCGGCGCAGGCGCAGGCGGCCGGAGGGAACAAAGCGGGAGGAATCAATGCCGGCGGCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5

Protein Analysis

123

Amino Acids

13.12

Weight (kDa)

10.18

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERF-like_N PF04419 55 - 88 9e-08 Small EDRK-rich factor 1/2-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 92, 165, 189
AciI CCGC 8 cut(s) 15, 92, 165, 296, 308, 323, 341, 360
AcoI YGGCCR 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 203
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 2 cut(s) 201, 324
ApeKI GCWGC 2 cut(s) 226, 283
AspLEI GCGC 4 cut(s) 142, 283, 313, 319
AspS9I GGNCC 2 cut(s) 58, 207
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 2 cut(s) 58, 207
BanII GRGCYC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 238, 270
BccI CCATC 2 cut(s) 142, 233
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 6 cut(s) 227, 284, 297, 309, 324, 361
BlsI GCNGC 6 cut(s) 228, 285, 298, 310, 325, 362
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 2 cut(s) 58, 207
BmgT120I GGNCC 2 cut(s) 58, 207
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 60
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 238, 270
Bsh1236I CGCG 3 cut(s) 92, 165, 189
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 203, 326
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 3 cut(s) 210, 327, 357
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 203, 326
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 27, 184
Bsp68I TCGCGA 1 cut(s) 189
BspACI CCGC 8 cut(s) 15, 92, 165, 296, 308, 323, 341, 360
BspANI GGCC 2 cut(s) 203, 326
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 3 cut(s) 92, 165, 189
BspMAI CTGCAG 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 27, 184
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 273
BstC8I GCNNGC 5 cut(s) 13, 144, 315, 321, 358
BstDEI CTNAG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 167
BstFNI CGCG 3 cut(s) 92, 165, 189
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 4 cut(s) 142, 283, 313, 319
BstKTI GATC 2 cut(s) 30, 187
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 27, 184
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 305, 314, 323
BstNI CCWGG 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 284
BstUI CGCG 3 cut(s) 92, 165, 189
BstV1I GCAGC 2 cut(s) 238, 270
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 203, 326
BtuMI TCGCGA 1 cut(s) 189
Cac8I GCNNGC 5 cut(s) 13, 144, 315, 321, 358
CfoI GCGC 4 cut(s) 142, 283, 313, 319
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 58, 207
CseI GACGC 1 cut(s) 281
CviJI RGCY 4 cut(s) 197, 203, 229, 326
CviKI_1 RGCY 4 cut(s) 197, 203, 229, 326
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 29, 186
DpnII GATC 2 cut(s) 27, 184
EaeI YGGCCR 1 cut(s) 324
EagI CGGCCG 1 cut(s) 324
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 58, 207
Eco52I CGGCCG 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 276
FaiI YATR 2 cut(s) 66, 68
FaqI GGGAC 1 cut(s) 284
FauI CCCGC 2 cut(s) 8, 334
Fnu4HI GCNGC 6 cut(s) 227, 284, 297, 309, 324, 361
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 227, 284, 297, 309, 324, 361
GlaI GCGC 4 cut(s) 141, 282, 312, 318
GluI GCNGC 6 cut(s) 227, 284, 297, 309, 324, 361
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 2 cut(s) 203, 326
HapII CCGG 3 cut(s) 210, 327, 357
HgaI GACGC 1 cut(s) 281
HhaI GCGC 4 cut(s) 142, 283, 313, 319
Hin1I GRCGYC 1 cut(s) 273
Hin6I GCGC 4 cut(s) 140, 281, 311, 317
HinP1I GCGC 4 cut(s) 140, 281, 311, 317
HinfI GANTC 1 cut(s) 348
HpaII CCGG 3 cut(s) 210, 327, 357
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 49, 114
Hpy188III TCNNGA 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 116, 298
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 314, 323
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 273
HspAI GCGC 4 cut(s) 140, 281, 311, 317
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 27, 184
Lsp1109I GCAGC 2 cut(s) 238, 270
LweI GCATC 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 19, 167
MalI GATC 2 cut(s) 29, 186
MboI GATC 2 cut(s) 27, 184
MhlI GDGCHC 1 cut(s) 199
MnlI CCTC 3 cut(s) 89, 323, 338
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 1 cut(s) 245
MspI CCGG 3 cut(s) 210, 327, 357
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 3 cut(s) 92, 165, 189
MwoI GCNNNNNNNGC 3 cut(s) 305, 314, 323
NaeI GCCGGC 1 cut(s) 358
NdeII GATC 2 cut(s) 27, 184
NgoMIV GCCGGC 1 cut(s) 356
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 19
NruI TCGCGA 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 348
PkrI GCNGC 6 cut(s) 228, 285, 298, 310, 325, 362
Psp6I CCWGG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 2 cut(s) 58, 207
PstI CTGCAG 1 cut(s) 288
RruI TCGCGA 1 cut(s) 189
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 6 cut(s) 227, 284, 297, 309, 324, 361
Sau3AI GATC 2 cut(s) 27, 184
Sau96I GGNCC 2 cut(s) 58, 207
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 46, 81, 108, 209
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 284
SinI GGWCC 2 cut(s) 58, 207
SsiI CCGC 8 cut(s) 15, 92, 165, 296, 308, 323, 341, 360
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 276
TaqII GACCGA 1 cut(s) 195
TauI GCSGC 4 cut(s) 299, 311, 326, 363
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 226, 283
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 58, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.