Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

27854903 .. 27857123

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGACCTTTAACCAGAGAGAGAAGGATCGGGAGAGAGCTCAGGCTCAGAGCGGCAAGGTTAGCAAGAACAAAGACAATGGCTTGACCCAAGAACAGCGCCGAGAGAGGGATGCCAAAGCACTTCAAGAAAAGCTGGCCAAGAAGGGTGATAAGAGTGCAGGGTTTCACATATTTAGCTACTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

9.84

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	3 cut(s)	38, 133, 177
AluI	AGCT	3 cut(s)	38, 133, 177
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	53, 59
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	52, 58
BspPI	GGATC	1 cut(s)	33
BsrBI	CCGCTC	1 cut(s)	51
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	39, 45
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	99
CviJI	RGCY	6 cut(s)	38, 44, 81, 133, 137, 177
CviKI_1	RGCY	6 cut(s)	38, 44, 81, 133, 137, 177
DdeI	CTNAG	2 cut(s)	39, 45
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	40
FaiI	YATR	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	29, 125
HpyAV	CCTTC	2 cut(s)	16, 136
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	39, 45
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	26, 26, 119, 144
LweI	GCATC	1 cut(s)	100
MalI	GATC	1 cut(s)	27
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	5 cut(s)	8, 40, 60, 135, 179
SfaNI	GCATC	1 cut(s)	100
SsiI	CCGC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.