Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001246.1

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

13938 .. 17486

Gene Structure 3549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001246.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggaaaagaaaaatggtcaccggcgtggagaacaagaattggggtttcgggtcgatctggattggttagccaacgtggcgctactgatgcagcagaatacgatgatcattagattggtaggttctgaacaactcgtcctttatatacccacccacctcttctcactcgcggacacattcaaccttgctctaatagacgaaggattgcacccatctgtgctcgcatcggcaatcagcgaacgcggtaaccagagagaccgagatcgcgaaagggctcaggccaggtccggcaacaagaccaagcagcccaaaaccgatggattaacccctgaacaacgccgagaaagggacgccaaggcgctgcaggaaaaagcggcaaagaaggcggcgcaggcgcaggcggccggagggaacaaagcgggaggaatcaatgccggcggcaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

9.92

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	170, 243, 267
AciI	CCGC	7 cut(s)	170, 243, 374, 386, 401, 419, 438
AcoI	YGGCCR	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	281
AleI	CACNNNNGTG	1 cut(s)	24
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	279, 402
ApeKI	GCWGC	3 cut(s)	91, 304, 361
AspLEI	GCGC	4 cut(s)	82, 361, 391, 397
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	103, 316, 348
BccI	CCATC	2 cut(s)	220, 311
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	2 cut(s)	83, 362
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	7 cut(s)	92, 305, 362, 375, 387, 402, 439
BlsI	GCNGC	7 cut(s)	93, 306, 363, 376, 388, 403, 440
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	78, 233
Bpu10I	CCTNAGC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	2 cut(s)	21, 434
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	402
BseXI	GCAGC	3 cut(s)	103, 316, 348
Bsh1236I	CGCG	3 cut(s)	170, 243, 267
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	281, 404
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	22, 288, 405, 435
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	281, 404
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	222, 277
Bsp143I	GATC	3 cut(s)	55, 105, 262
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	7 cut(s)	170, 243, 374, 386, 401, 419, 438
BspANI	GGCC	2 cut(s)	281, 404
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	3 cut(s)	170, 243, 267
BspMAI	CTGCAG	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	249
BsrFI	RCCGGY	2 cut(s)	21, 434
BssAI	RCCGGY	2 cut(s)	21, 434
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	55, 105, 262
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	222, 393, 399, 436
BstDEI	CTNAG	1 cut(s)	276
BstEII	GGTNACC	2 cut(s)	17, 245
BstFNI	CGCG	3 cut(s)	170, 243, 267
BstH2I	RGCGCY	2 cut(s)	83, 362
BstHHI	GCGC	4 cut(s)	82, 361, 391, 397
BstKTI	GATC	3 cut(s)	58, 108, 265
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	55, 105, 262
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 88, 383, 392, 401
BstNI	CCWGG	1 cut(s)	283
BstPI	GGTNACC	2 cut(s)	17, 245
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	3 cut(s)	170, 243, 267
BstV1I	GCAGC	3 cut(s)	103, 316, 348
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	281, 404
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	222, 393, 399, 436
CfoI	GCGC	4 cut(s)	82, 361, 391, 397
Cfr10I	RCCGGY	2 cut(s)	21, 434
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	1 cut(s)	359
CviJI	RGCY	5 cut(s)	71, 275, 281, 307, 404
CviKI_1	RGCY	5 cut(s)	71, 275, 281, 307, 404
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	57, 107, 264
DpnII	GATC	3 cut(s)	55, 105, 262
EaeI	YGGCCR	1 cut(s)	402
EagI	CGGCCG	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	402
Eco91I	GGTNACC	2 cut(s)	17, 245
EcoO65I	GGTNACC	2 cut(s)	17, 245
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	354
FaiI	YATR	2 cut(s)	144, 146
FaqI	GGGAC	1 cut(s)	362
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	7 cut(s)	92, 305, 362, 375, 387, 402, 439
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	7 cut(s)	92, 305, 362, 375, 387, 402, 439
GlaI	GCGC	4 cut(s)	81, 360, 390, 396
GluI	GCNGC	7 cut(s)	92, 305, 362, 375, 387, 402, 439
HaeII	RGCGCY	2 cut(s)	83, 362
HaeIII	GGCC	2 cut(s)	281, 404
HapII	CCGG	4 cut(s)	22, 288, 405, 435
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	4 cut(s)	82, 361, 391, 397
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	4 cut(s)	80, 359, 389, 395
HinP1I	GCGC	4 cut(s)	80, 359, 389, 395
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	4 cut(s)	22, 288, 405, 435
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	59, 266
HpyAV	CCTTC	2 cut(s)	194, 376
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	91, 208, 364
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 88, 383, 392, 401
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	4 cut(s)	80, 359, 389, 395
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	55, 105, 262
Lsp1109I	GCAGC	3 cut(s)	103, 316, 348
LweI	GCATC	2 cut(s)	78, 233
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	17, 245
MalI	GATC	3 cut(s)	57, 107, 264
MboI	GATC	3 cut(s)	55, 105, 262
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	222, 277
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	3 cut(s)	167, 401, 416
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	4 cut(s)	22, 288, 405, 435
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	3 cut(s)	170, 243, 267
MwoI	GCNNNNNNNGC	5 cut(s)	77, 88, 383, 392, 401
NaeI	GCCGGC	1 cut(s)	436
NdeII	GATC	3 cut(s)	55, 105, 262
NgoMIV	GCCGGC	1 cut(s)	434
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	17
NruI	TCGCGA	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	7 cut(s)	93, 306, 363, 376, 388, 403, 440
Psp6I	CCWGG	1 cut(s)	281
PspEI	GGTNACC	2 cut(s)	17, 245
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	366
RruI	TCGCGA	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	7 cut(s)	92, 305, 362, 375, 387, 402, 439
Sau3AI	GATC	3 cut(s)	55, 105, 262
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	222, 277
SetI	ASST	5 cut(s)	78, 124, 159, 186, 287
SfaNI	GCATC	2 cut(s)	78, 233
SfcI	CTRYAG	1 cut(s)	362
SgrAI	CRCCGGYG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	7 cut(s)	170, 243, 374, 386, 401, 419, 438
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	38
TauI	GCSGC	4 cut(s)	377, 389, 404, 441
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	91, 304, 361
Tsp45I	GTSAC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.