Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Reverse (-)

7137640 .. 7138005

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCGACAGTGGGCTGGGAGCAACGCCGGAATCTGTGCTGCGATGCTGGGAACGGGCGCTGTGGTATGTGCTGCAGGCGGTGAACGCTGGGCGGAGATGCGTTCAGGTTTGCTGGAGGGCGCGGGGATGAGGCTGGCCGGCTGTGGGCTGCGCCGAGGTCGCCAGGTCAGGTCGGTGCTGGAGGCAGATCACCAGCGACGTGGATTGGTTGGGTGCATCGGAGCTGGGCGTTGGAGGTGCAGCGTAGGCGCTGGATCTGCGCAGCAGGTGGGCTGGAGGCTGGGCAGGGCTTCGCCGGTGAAGGTCTGTGCCGGTGAAGGACTGCGCCAGTGTCGAGGCTGCTGCTGGATGATGCGCGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.78

Weight (kDa)

10.5

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	256
AccII	CGCG	2 cut(s)	122, 357
AciI	CCGC	3 cut(s)	78, 92, 122
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	144
AjiI	CACGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	7 cut(s)	38, 71, 148, 240, 262, 339, 342
AspLEI	GCGC	7 cut(s)	59, 122, 153, 251, 262, 327, 357
AsuHPI	GGTGA	4 cut(s)	92, 182, 310, 326
BbvI	GCAGC	7 cut(s)	25, 58, 135, 252, 274, 326, 329
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	2 cut(s)	60, 252
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	7 cut(s)	39, 72, 149, 241, 263, 340, 343
BlsI	GCNGC	7 cut(s)	40, 73, 150, 242, 264, 341, 344
Bme1390I	CCNGG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	4 cut(s)	33, 87, 225, 342
BpmI	CTGGAG	3 cut(s)	134, 200, 295
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	3 cut(s)	137, 295, 311
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	132, 354
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	7 cut(s)	25, 58, 135, 252, 274, 326, 329
BseYI	CCCAGC	5 cut(s)	14, 46, 87, 224, 280
BsgI	GTGCAG	1 cut(s)	259
Bsh1236I	CGCG	2 cut(s)	122, 357
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	27, 138, 296, 312
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	187, 254, 358
BspACI	CCGC	3 cut(s)	78, 92, 122
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	122, 357
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	262
BsrFI	RCCGGY	3 cut(s)	137, 295, 311
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	3 cut(s)	137, 295, 311
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	187, 254, 358
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	76, 135, 139
BstF5I	GGATG	2 cut(s)	132, 354
BstFNI	CGCG	2 cut(s)	122, 357
BstH2I	RGCGCY	2 cut(s)	60, 252
BstHHI	GCGC	7 cut(s)	59, 122, 153, 251, 262, 327, 357
BstKTI	GATC	3 cut(s)	190, 257, 361
BstMBI	GATC	3 cut(s)	187, 254, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 159, 246, 257
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	2 cut(s)	122, 357
BstV1I	GCAGC	7 cut(s)	25, 58, 135, 252, 274, 326, 329
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	132, 354
BtsIMutI	CAGTG	2 cut(s)	14, 335
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	3 cut(s)	76, 135, 139
CfoI	GCGC	7 cut(s)	59, 122, 153, 251, 262, 327, 357
Cfr10I	RCCGGY	3 cut(s)	137, 295, 311
DpnI	GATC	3 cut(s)	189, 256, 360
DpnII	GATC	3 cut(s)	187, 254, 358
EaeI	YGGCCR	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	162
FaiI	YATR	1 cut(s)	67
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	39, 72, 149, 241, 263, 340, 343
FokI	GGATG	2 cut(s)	139, 361
Fsp4HI	GCNGC	7 cut(s)	39, 72, 149, 241, 263, 340, 343
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	7 cut(s)	58, 121, 152, 250, 261, 326, 356
GluI	GCNGC	7 cut(s)	39, 72, 149, 241, 263, 340, 343
GsaI	CCCAGC	5 cut(s)	18, 50, 91, 228, 284
GsuI	CTGGAG	3 cut(s)	134, 200, 295
HaeII	RGCGCY	2 cut(s)	60, 252
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	4 cut(s)	27, 138, 296, 312
HhaI	GCGC	7 cut(s)	59, 122, 153, 251, 262, 327, 357
Hin6I	GCGC	7 cut(s)	57, 120, 151, 249, 260, 325, 355
HinP1I	GCGC	7 cut(s)	57, 120, 151, 249, 260, 325, 355
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	4 cut(s)	27, 138, 296, 312
HphI	GGTGA	4 cut(s)	92, 182, 310, 326
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	295, 311
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	74, 216, 240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 159, 246, 257
HpySE526I	ACGT	1 cut(s)	199
HspAI	GCGC	7 cut(s)	57, 120, 151, 249, 260, 325, 355
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	187, 254, 358
LmnI	GCTCC	2 cut(s)	18, 221
Lsp1109I	GCAGC	7 cut(s)	25, 58, 135, 252, 274, 326, 329
LweI	GCATC	4 cut(s)	33, 87, 225, 342
MaeII	ACGT	1 cut(s)	199
MalI	GATC	3 cut(s)	189, 256, 360
MboI	GATC	3 cut(s)	187, 254, 358
MflI	RGATCY	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	109, 123, 149, 175, 228, 270, 329
MroNI	GCCGGC	1 cut(s)	137
MspI	CCGG	4 cut(s)	27, 138, 296, 312
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	122, 357
MwoI	GCNNNNNNNGC	4 cut(s)	84, 159, 246, 257
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	187, 254, 358
NgoMIV	GCCGGC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	40, 73, 150, 242, 264, 341, 344
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	5 cut(s)	14, 46, 87, 224, 280
PspGI	CCWGG	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	254
SatI	GCNGC	7 cut(s)	39, 72, 149, 241, 263, 340, 343
Sau3AI	GATC	3 cut(s)	187, 254, 358
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	9 cut(s)	109, 160, 168, 173, 202, 226, 239, 270, 306
SfaNI	GCATC	4 cut(s)	33, 87, 225, 342
SfcI	CTRYAG	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	295
SsiI	CCGC	3 cut(s)	78, 92, 122
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	2 cut(s)	14, 335
TseI	GCWGC	7 cut(s)	38, 71, 148, 240, 262, 339, 342
TspRI	CASTG	2 cut(s)	14, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.