Rroxscaffold_5G00359030

4F5 protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002526
Physical Location & Seq
Forward (+)
39076193 .. 39077097
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359030.1

Sequence Viewer

Length: 207 bp
ATGACTCGCGGTAACCAGAGAGAGAAGGATCGGGAGAGAGCTCAGGCTCGGGGCGGCAAGGGTAGCAAGAACAAAGACGATGGCTTGACCCCAGAACAGCGCCGAGAGAGGGATGCCAAAGCACTCCAAGAAAAGCTGGCCAAGAAGGCTGATAAGGGTGCAGGGGCGGCCGGAGCGAACTCCTCCTCTGGAGGTAAAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5

Protein Analysis

68

Amino Acids

7.24

Weight (kDa)

10.39

Isoelectric Point (pI)

25.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERF-like_N PF04419 1 - 35 1.8e-10 Small EDRK-rich factor 1/2-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 9, 54, 167
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 138, 168
AfiI CCNNNNNNNGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 41, 136
AluI AGCT 2 cut(s) 41, 136
Alw21I GWGCWC 1 cut(s) 43
AlwI GGATC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 2 cut(s) 138, 168
AspLEI GCGC 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 140
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 2 cut(s) 55, 168
BlsI GCNGC 2 cut(s) 56, 169
BmeT110I CYCGRG 1 cut(s) 48
BmsI GCATC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 172, 175
BseX3I CGGCCG 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 140, 170
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 2 cut(s) 140, 170
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 3 cut(s) 9, 54, 167
BspANI GGCC 2 cut(s) 140, 170
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 9
BspPI GGATC 1 cut(s) 36
BssMI GATC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 4 cut(s) 63, 146, 167, 173
BstPI GGTNACC 1 cut(s) 11
BstUI CGCG 1 cut(s) 9
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 140, 170
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 102
CviJI RGCY 7 cut(s) 41, 47, 84, 136, 140, 149, 170
CviKI_1 RGCY 7 cut(s) 41, 47, 84, 136, 140, 149, 170
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 138, 168
EagI CGGCCG 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 41
EclXI CGGCCG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 43
Eco52I CGGCCG 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 55, 168
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 55, 168
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 55, 168
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 140, 170
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 32, 189
HpyAV CCTTC 2 cut(s) 19, 139
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 146, 167, 173
HpyF3I CTNAG 1 cut(s) 42
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 7 cut(s) 29, 29, 105, 122, 147, 174, 184
LweI GCATC 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 4 cut(s) 102, 185, 193, 196
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 4 cut(s) 63, 146, 167, 173
NdeII GATC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 56, 169
Psp124BI GAGCTC 1 cut(s) 43
PspEI GGTNACC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 43
SatI GCNGC 2 cut(s) 55, 168
Sau3AI GATC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 43, 138, 196
SfaNI GCATC 1 cut(s) 103
SsiI CCGC 3 cut(s) 9, 54, 167
SstI GAGCTC 1 cut(s) 43
TauI GCSGC 2 cut(s) 57, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.