Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

37485768 .. 37486818

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCAAGGTTCACATGGATTCGTGCTGCTTTCTTTGTCATCCTAATCCTCAACTTTGCCATGAATGTTGTGAATGTCCAGCGGCATGCACATATCGGTGTTCTGCAACTAAACACAAGAAGCCATGTCTGCTCTACTGCAATGAGTGTTGTATACAATGTCTATGTGTTCCATCAGGTACATATGGACACAAGGAAGAATGTCCATGCTATAACAACTGGAAGACACATCGTGGCACTCCCAAGTGTCCATGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.9

Weight (kDa)

10.41

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	27, 83
BlsI	GCNGC	2 cut(s)	28, 84
BpiI	GAAGAC	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	223
BssNAI	GTATAC	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	229
BstZ17I	GTATAC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	6 cut(s)	15, 61, 86, 125, 206, 251
CviJI	RGCY	1 cut(s)	123
CviKI_1	RGCY	1 cut(s)	123
CviQI	GTAC	1 cut(s)	179
DraIII	CACNNNGTG	1 cut(s)	232
FaeI	CATG	6 cut(s)	18, 64, 89, 128, 209, 254
FatI	CATG	6 cut(s)	14, 60, 85, 124, 205, 250
FauNDI	CATATG	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	27, 83
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	27, 83
GluI	GCNGC	2 cut(s)	27, 83
Hin1II	CATG	6 cut(s)	18, 64, 89, 128, 209, 254
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	12, 154
Hpy8I	GTNNAC	2 cut(s)	12, 154
HpyCH4V	TGCA	3 cut(s)	89, 106, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	18, 64, 89, 128, 209, 254
LpnPI	CCDG	3 cut(s)	92, 161, 204
Lsp1109I	GCAGC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	208, 234
MnlI	CCTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeI	CATATG	1 cut(s)	183
NlaIII	CATG	6 cut(s)	18, 64, 89, 128, 209, 254
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	28, 84
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	2 cut(s)	27, 83
SetI	ASST	2 cut(s)	11, 180
SmiMI	CAYNNNNRTG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	89
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	257
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	77
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.