Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

19472120 .. 19473208

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGATGTGTGGATAATAATGCCAGACAAGCACCCCCAACTGAAAAATTATTTATTTGCGAAAGTGTAAAAAGCGCGGCTTCTCGAGACTTCCATAGATTGTCTGCTTCCGAACGTATTTCCCCTTTTGGCCACCGCCTCTCCTCCGACCCCAACGCCATCAAAGCCTCCAGCAAGCCTTCTTCTTCTTCTTCATCAATCTCTCTGGTTTGCTCGACCAGCGAACGCGGAAACCAGATCGATCGAGACCGCGAAAGGGCTCAGGCCAGGTCTGGCGGCAACAAATCCAAGGCCAAAAATGACGGATTAACCCCTGAACAACGCCGCGAAAGGGATGCGAAAGCGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5

Protein Analysis

117

Amino Acids

12.69

Weight (kDa)

10.02

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	77, 228, 252, 327
AciI	CCGC	6 cut(s)	77, 136, 228, 250, 276, 325
AcoI	YGGCCR	1 cut(s)	130
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	256, 331
AjnI	CCWGG	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	81, 240
Ama87I	CYCGRG	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	3 cut(s)	130, 264, 291
AspLEI	GCGC	2 cut(s)	77, 346
AvaI	CYCGRG	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	262
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	81, 240
BfmI	CTRYAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	3 cut(s)	78, 277, 325
BlsI	GCNGC	3 cut(s)	79, 278, 326
Bme1390I	CCNGG	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 331
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	256, 331
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	133
Bsh1236I	CGCG	4 cut(s)	77, 228, 252, 327
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	132, 266, 293
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	256, 331
BsmAI	GTCTC	2 cut(s)	81, 240
BsnI	GGCC	3 cut(s)	132, 266, 293
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	237, 241
BspACI	CCGC	6 cut(s)	77, 136, 228, 250, 276, 325
BspANI	GGCC	3 cut(s)	132, 266, 293
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	4 cut(s)	77, 228, 252, 327
BspTNI	GGTCTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	237, 241
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	4 cut(s)	77, 228, 252, 327
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	2 cut(s)	77, 346
BstKTI	GATC	2 cut(s)	240, 244
BstMAI	GTCTC	2 cut(s)	81, 240
BstMBI	GATC	2 cut(s)	237, 241
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 164, 219
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	4 cut(s)	77, 228, 252, 327
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	132, 266, 293
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	2 cut(s)	77, 346
ClaI	ATCGAT	1 cut(s)	240
CviJI	RGCY	7 cut(s)	80, 132, 167, 178, 260, 266, 293
CviKI_1	RGCY	7 cut(s)	80, 132, 167, 178, 260, 266, 293
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	239, 243
DpnII	GATC	2 cut(s)	237, 241
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	288
FaiI	YATR	1 cut(s)	96
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
Fnu4HI	GCNGC	3 cut(s)	78, 277, 325
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	78, 277, 325
GlaI	GCGC	2 cut(s)	76, 345
GluI	GCNGC	3 cut(s)	78, 277, 325
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	132, 266, 293
HhaI	GCGC	2 cut(s)	77, 346
Hin6I	GCGC	2 cut(s)	75, 344
HinP1I	GCGC	2 cut(s)	75, 344
Hpy188I	TCNGA	2 cut(s)	112, 148
Hpy188III	TCNNGA	3 cut(s)	84, 86, 245
HpyAV	CCTTC	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 164, 219
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	115
HspAI	GCGC	2 cut(s)	75, 344
Kzo9I	GATC	2 cut(s)	237, 241
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	115
MalI	GATC	2 cut(s)	239, 243
MboI	GATC	2 cut(s)	237, 241
MboII	GAAGA	4 cut(s)	174, 177, 180, 183
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	149, 154, 178
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	4 cut(s)	77, 228, 252, 327
MwoI	GCNNNNNNNGC	3 cut(s)	29, 164, 219
NdeII	GATC	2 cut(s)	237, 241
PaeR7I	CTCGAG	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	79, 278, 326
Ple19I	CGATCG	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PvuI	CGATCG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	78, 277, 325
Sau3AI	GATC	2 cut(s)	237, 241
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	2 cut(s)	118, 272
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	6 cut(s)	77, 136, 228, 250, 276, 325
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	4 cut(s)	85, 215, 240, 244
TasI	AATT	1 cut(s)	47
TauI	GCSGC	3 cut(s)	80, 279, 327
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.