Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

7924135 .. 7925396

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13615.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACTCGTGGAAGTCAGAGAGAGCGTGACCGTGAAAGAGCTGCCGCTCGTGCTGGTGGAAAGGGTAAGAATGGTGACGATGGTTTGACGCCGGAGCAACGCCGTGAAAGAGATGGGAAAGCATTGCAAGAGAAAGCGGCTAAGAAAGCTGCTCAAGCTGCAGGTGCGAGTTCTGGTGGTGCAGCTGGAGGAAAAGGAGCTGCTGCTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5

Protein Analysis

71

Amino Acids

7.18

Weight (kDa)

10.72

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SERF-like_N	PF04419	1 - 35	3.7e-11	Small EDRK-rich factor 1/2-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	2 cut(s)	45, 137
AcyI	GRCGYC	1 cut(s)	89
AluBI	AGCT	5 cut(s)	41, 149, 158, 185, 200
AluI	AGCT	5 cut(s)	41, 149, 158, 185, 200
ApeKI	GCWGC	6 cut(s)	41, 149, 158, 182, 200, 203
AsuHPI	GGTGA	1 cut(s)	86
BauI	CACGAG	2 cut(s)	6, 48
BbvI	GCAGC	6 cut(s)	28, 136, 145, 187, 190, 194
BccI	CCATC	2 cut(s)	74, 107
BceAI	ACGGC	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	8 cut(s)	42, 45, 138, 150, 159, 183, 201, 204
BlsI	GCNGC	8 cut(s)	43, 46, 139, 151, 160, 184, 202, 205
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	122
BseXI	GCAGC	6 cut(s)	28, 136, 145, 187, 190, 194
BsgI	GTGCAG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	92
BspACI	CCGC	2 cut(s)	45, 137
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	2 cut(s)	6, 48
Bst2BI	CACGAG	2 cut(s)	6, 48
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	141, 207
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 146, 155, 158, 164
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	6 cut(s)	28, 136, 145, 187, 190, 194
BveI	ACCTGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	97
CviJI	RGCY	6 cut(s)	41, 140, 149, 158, 185, 200
CviKI_1	RGCY	6 cut(s)	41, 140, 149, 158, 185, 200
DdeI	CTNAG	2 cut(s)	141, 207
Fnu4HI	GCNGC	8 cut(s)	42, 45, 138, 150, 159, 183, 201, 204
Fsp4HI	GCNGC	8 cut(s)	42, 45, 138, 150, 159, 183, 201, 204
GluI	GCNGC	8 cut(s)	42, 45, 138, 150, 159, 183, 201, 204
GsuI	CTGGAG	1 cut(s)	207
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	127, 161, 182
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 146, 155, 158, 164
HpyF3I	CTNAG	2 cut(s)	141, 207
Hsp92I	GRCGYC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	94, 197
LpnPI	CCDG	5 cut(s)	39, 105, 147, 159, 171
Lsp1109I	GCAGC	6 cut(s)	28, 136, 145, 187, 190, 194
MaeIII	GTNAC	2 cut(s)	26, 74
MbiI	CCGCTC	1 cut(s)	47
MnlI	CCTC	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	50, 146, 155, 158, 164
NmuCI	GTSAC	2 cut(s)	26, 74
PaqCI	CACCTGC	1 cut(s)	152
PkrI	GCNGC	8 cut(s)	43, 46, 139, 151, 160, 184, 202, 205
PstI	CTGCAG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	185
SatI	GCNGC	8 cut(s)	42, 45, 138, 150, 159, 183, 201, 204
SetI	ASST	6 cut(s)	43, 151, 160, 166, 187, 202
SfcI	CTRYAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SsiI	CCGC	2 cut(s)	45, 137
TaaI	ACNGT	1 cut(s)	32
TauI	GCSGC	2 cut(s)	47, 140
TseFI	GTSAC	2 cut(s)	26, 74
TseI	GCWGC	6 cut(s)	41, 149, 158, 182, 200, 203
Tsp45I	GTSAC	2 cut(s)	26, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.