Rh6DG187400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002526
Physical Location & Seq
Reverse (-)
33378807 .. 33379019
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG187400.1

Sequence Viewer

Length: 213 bp
ATGCGTTCAGGTCTACTGGAGGACGCGGGGATGAGACTGGTCGGCTGTGGGCTGCGCCAAGGTCAGGTCGGCGCTGGAGACGGATCACCGGCTACGTGGATTGGTTGGGCGCGTCGGAGCTGGGCGTCAGAGGTGCAGCGTAGGCTCTGGATCTGCGCAGCAGGTGGGCTGGAGGTTGGGCAGGGCTTTGCCGGTGAAGGACTGAACCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.39

Weight (kDa)

9.0

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 13
AccII CGCG 2 cut(s) 26, 112
AciI CCGC 1 cut(s) 26
AclWI GGATC 2 cut(s) 91, 158
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 64
AgeI ACCGGT 1 cut(s) 207
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 28, 72
AlwI GGATC 2 cut(s) 91, 158
ApeKI GCWGC 3 cut(s) 52, 136, 158
AsiGI ACCGGT 1 cut(s) 207
AspLEI GCGC 4 cut(s) 57, 74, 112, 158
AsuHPI GGTGA 2 cut(s) 78, 206
BbvI GCAGC 3 cut(s) 39, 148, 170
BcoDI GTCTC 2 cut(s) 28, 72
BfoI RGCGCY 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 53, 137, 159
BlsI GCNGC 3 cut(s) 54, 138, 160
BpmI CTGGAG 3 cut(s) 38, 96, 191
BsaAI YACGTR 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 3 cut(s) 88, 191, 207
Bse1I ACTGG 2 cut(s) 21, 42
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 21, 42
BseXI GCAGC 3 cut(s) 39, 148, 170
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 26, 112
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 3 cut(s) 89, 192, 208
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 28, 72
BsmBI CGTCTC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 83, 150
BspACI CCGC 1 cut(s) 26
BspFNI CGCG 2 cut(s) 26, 112
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 2 cut(s) 91, 158
BsrFI RCCGGY 3 cut(s) 88, 191, 207
BsrI ACTGG 2 cut(s) 21, 42
BssAI RCCGGY 3 cut(s) 88, 191, 207
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 83, 150
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 96
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 2 cut(s) 26, 112
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 4 cut(s) 57, 74, 112, 158
BstKTI GATC 2 cut(s) 86, 153
BstMAI GTCTC 2 cut(s) 28, 72
BstMBI GATC 2 cut(s) 83, 150
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstUI CGCG 2 cut(s) 26, 112
BstV1I GCAGC 3 cut(s) 39, 148, 170
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BtsCI GGATG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 152
CfoI GCGC 4 cut(s) 57, 74, 112, 158
Cfr10I RCCGGY 3 cut(s) 88, 191, 207
CseI GACGC 3 cut(s) 32, 101, 114
CspAI ACCGGT 1 cut(s) 207
CviJI RGCY 7 cut(s) 45, 52, 92, 120, 145, 169, 186
CviKI_1 RGCY 7 cut(s) 45, 52, 92, 120, 145, 169, 186
DpnI GATC 2 cut(s) 85, 152
DpnII GATC 2 cut(s) 83, 150
Eco130I CCWWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 72
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 53, 137, 159
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 53, 137, 159
FspI TGCGCA 1 cut(s) 157
GlaI GCGC 4 cut(s) 56, 73, 111, 157
GluI GCNGC 3 cut(s) 53, 137, 159
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 3 cut(s) 38, 96, 191
HaeII RGCGCY 1 cut(s) 75
HapII CCGG 3 cut(s) 89, 192, 208
HgaI GACGC 3 cut(s) 32, 101, 114
HhaI GCGC 4 cut(s) 57, 74, 112, 158
Hin1I GRCGYC 1 cut(s) 125
Hin6I GCGC 4 cut(s) 55, 72, 110, 156
HinP1I GCGC 4 cut(s) 55, 72, 110, 156
HpaII CCGG 3 cut(s) 89, 192, 208
HphI GGTGA 2 cut(s) 78, 206
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 117, 130
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 125
HspAI GCGC 4 cut(s) 55, 72, 110, 156
Kzo9I GATC 2 cut(s) 83, 150
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 3 cut(s) 39, 148, 170
MaeII ACGT 1 cut(s) 95
MalI GATC 2 cut(s) 85, 152
MboI GATC 2 cut(s) 83, 150
MflI RGATCY 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 13, 124, 166
MspI CCGG 3 cut(s) 89, 192, 208
MvnI CGCG 2 cut(s) 26, 112
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 2 cut(s) 83, 150
NsbI TGCGCA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 3 cut(s) 54, 138, 160
Ppu21I YACGTR 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 150
SatI GCNGC 3 cut(s) 53, 137, 159
Sau3AI GATC 2 cut(s) 83, 150
SetI ASST 8 cut(s) 13, 64, 69, 98, 122, 135, 166, 177
SsiI CCGC 1 cut(s) 26
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 98
TseI GCWGC 3 cut(s) 52, 136, 158
TspGWI ACGGA 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.