Rmu_sc0003368.1_g000062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003368.1
OG0002526
Physical Location & Seq
Reverse (-)
334354 .. 337213
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003368.1_g000062.1.cds

Sequence Viewer

Length: 333 bp
atggaaaagaaaaatggccgctggcgtggagaacaagaattggggtttcgggtcgatctagattggttcgctgacgtggtgctactgatgcagcagaatacgatgcctagccaggatatgctaattgttgagcaagctcaagctttagaagcaaatagagcagccttagaggaaaataaggcgaaagccatcatcctaatgacttgtcatatggatgattcgctccagtacgagtatatgaacgaagaagaccccataaggttgtgggtctcactcgaagaaagatttggcaacgtccgtgactccctgcttcctgaccttgaaatgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

110

Amino Acids

12.96

Weight (kDa)

4.46

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 16
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 1 cut(s) 323
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 2 cut(s) 137, 143
AluI AGCT 2 cut(s) 137, 143
Alw26I GTCTC 1 cut(s) 274
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 91, 161
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 103, 173
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 59, 108
BisI GCNGC 3 cut(s) 19, 92, 162
BlsI GCNGC 3 cut(s) 20, 93, 163
Bme1390I CCNGG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 78, 93
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 192, 220
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 103, 173
BshFI GGCC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 19
BspANI GGCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 226
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 23, 135
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 192, 220
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 88, 149, 158
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 103, 173
BstV2I GAAGAC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 18
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 192, 220
Cac8I GCNNGC 2 cut(s) 23, 135
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 6 cut(s) 18, 111, 137, 143, 164, 188
CviKI_1 RGCY 6 cut(s) 18, 111, 137, 143, 164, 188
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 111
FaiI YATR 6 cut(s) 119, 210, 212, 237, 239, 257
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 19, 92, 162
FokI GGATG 2 cut(s) 179, 227
Fsp4HI GCNGC 3 cut(s) 19, 92, 162
FspBI CTAG 2 cut(s) 59, 108
GluI GCNGC 3 cut(s) 19, 92, 162
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 2 cut(s) 218, 302
Hpy188III TCNNGA 2 cut(s) 59, 314
HpyCH4IV ACGT 2 cut(s) 75, 294
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 149, 158
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 75, 294
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 7, 98, 125, 239, 320, 327
Lsp1109I GCAGC 2 cut(s) 103, 173
LweI GCATC 2 cut(s) 78, 93
MaeI CTAG 2 cut(s) 59, 108
MaeII ACGT 2 cut(s) 75, 294
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 257, 260, 290
MluCI AATT 2 cut(s) 38, 123
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 1 cut(s) 163
MslI CAYNNNNRTG 2 cut(s) 197, 213
MspA1I CMGCKG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 88, 149, 158
NdeI CATATG 1 cut(s) 210
NdeII GATC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 20, 93, 163
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 197, 213
SatI GCNGC 3 cut(s) 19, 92, 162
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 113
SetI ASST 6 cut(s) 78, 139, 145, 263, 297, 321
SfaNI GCATC 2 cut(s) 78, 93
SmiMI CAYNNNNRTG 2 cut(s) 197, 213
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 2 cut(s) 38, 123
SsiI CCGC 1 cut(s) 19
SspMI CTAG 2 cut(s) 59, 108
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 78, 297
TaqI TCGA 2 cut(s) 54, 276
TasI AATT 2 cut(s) 38, 123
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 218
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 91, 161
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 287
XbaI TCTAGA 1 cut(s) 58
XspI CTAG 2 cut(s) 59, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.