Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Reverse (-)

38218352 .. 38218783

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAACCGAATCGGGTCGAGGGCAGCAATCGGGTCGTCCAGCTGCGTCGGTCTTCCGGAGCCGGGTTGCCGGTGCAAACGAGTGAAGTGACGTCGGAATCCGAAGAGGAATCCAGTCCGAGATCGGTGAGTCTCAAGGGCAGCACCTCGGAGGCGTGCGTGGAATGGGCAGTAGCGCGGCTGGTCTTCTGGGTAGGGCTGAGTAGTGTGCTGGCACGGTTTGCAGGCTGGCTGAGGCGAGGAGCCACGCTGAGGTTGGCCGGCTGTGGGCTGCGCCGAGGTCAGGTTGGTGCTGGAGGCGAATCATCGACGACGTGGATTGGTTGGGCACGTCGGAGCTGGGCGTTGGAGGTGCAGCGTAGGCGCTGGATCTGCGCAGCAGGTGGGCTAGAGGCTGGGCAGGGCTTCGCCGATGAATGTCTGTGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.47

Weight (kDa)

9.47

Isoelectric Point (pI)

76.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
AatII	GACGTC	1 cut(s)	95
Acc16I	TGCGCA	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	371
AccII	CGCG	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	4 cut(s)	63, 252, 267, 283
AjiI	CACGTC	2 cut(s)	315, 332
AluBI	AGCT	2 cut(s)	43, 339
AluI	AGCT	2 cut(s)	43, 339
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	6 cut(s)	24, 43, 141, 271, 355, 377
AspLEI	GCGC	4 cut(s)	178, 276, 366, 377
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	45, 178
BbvCI	CCTCAGC	2 cut(s)	233, 251
BbvI	GCAGC	6 cut(s)	30, 36, 153, 258, 367, 389
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	7 cut(s)	25, 44, 142, 179, 272, 356, 378
BlsI	GCNGC	7 cut(s)	26, 45, 143, 180, 273, 357, 379
Bme1390I	CCNGG	1 cut(s)	64
BmgBI	CACGTC	2 cut(s)	315, 332
BmiI	GGNNCC	3 cut(s)	6, 61, 244
BmrFI	CCNGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	45, 178
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	2 cut(s)	233, 251
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	147, 277
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 252, 267, 283
Bse118I	RCCGGY	3 cut(s)	70, 260, 426
Bse1I	ACTGG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	147, 277
BseLI	CCNNNNNNNGG	4 cut(s)	63, 252, 267, 283
BseMII	CTCAG	3 cut(s)	191, 224, 242
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	6 cut(s)	30, 36, 153, 258, 367, 389
BseYI	CCCAGC	2 cut(s)	339, 395
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	5 cut(s)	57, 63, 71, 261, 427
BslI	CCNNNNNNNGG	4 cut(s)	63, 252, 267, 283
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	122, 369
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	3 cut(s)	192, 225, 243
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	6, 61, 244
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	377
BsrFI	RCCGGY	3 cut(s)	70, 260, 426
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	3 cut(s)	70, 260, 426
BssECI	CCNNGG	2 cut(s)	147, 277
BssMI	GATC	2 cut(s)	122, 369
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	5 cut(s)	157, 213, 226, 230, 262
BstDEI	CTNAG	3 cut(s)	200, 233, 251
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	4 cut(s)	178, 276, 366, 377
BstKTI	GATC	2 cut(s)	125, 372
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	122, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 361, 372
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	6 cut(s)	30, 36, 153, 258, 367, 389
BstV2I	GAAGAC	2 cut(s)	45, 178
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	260
BtrI	CACGTC	2 cut(s)	315, 332
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	5 cut(s)	157, 213, 226, 230, 262
CfoI	GCGC	4 cut(s)	178, 276, 366, 377
Cfr10I	RCCGGY	3 cut(s)	70, 260, 426
CseI	GACGC	1 cut(s)	35
DdeI	CTNAG	3 cut(s)	200, 233, 251
DpnI	GATC	2 cut(s)	124, 371
DpnII	GATC	2 cut(s)	122, 369
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	25, 44, 142, 179, 272, 356, 378
Fsp4HI	GCNGC	7 cut(s)	25, 44, 142, 179, 272, 356, 378
FspBI	CTAG	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	376
GlaI	GCGC	4 cut(s)	177, 275, 365, 376
GluI	GCNGC	7 cut(s)	25, 44, 142, 179, 272, 356, 378
GsaI	CCCAGC	2 cut(s)	343, 399
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	5 cut(s)	57, 63, 71, 261, 427
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	4 cut(s)	178, 276, 366, 377
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	4 cut(s)	176, 274, 364, 375
HinP1I	GCGC	4 cut(s)	176, 274, 364, 375
HinfI	GANTC	5 cut(s)	10, 98, 110, 130, 302
HpaII	CCGG	5 cut(s)	57, 63, 71, 261, 427
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	5 cut(s)	97, 103, 120, 151, 336
Hpy188III	TCNNGA	1 cut(s)	57
Hpy99I	CGWCG	5 cut(s)	51, 97, 313, 316, 336
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	3 cut(s)	92, 314, 331
HpyCH4V	TGCA	3 cut(s)	76, 224, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 361, 372
HpyF3I	CTNAG	3 cut(s)	200, 233, 251
HpySE526I	ACGT	3 cut(s)	92, 314, 331
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	4 cut(s)	176, 274, 364, 375
Kpn2I	TCCGGA	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	122, 369
LmnI	GCTCC	3 cut(s)	59, 242, 336
Lsp1109I	GCAGC	6 cut(s)	30, 36, 153, 258, 367, 389
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	3 cut(s)	92, 314, 331
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	124, 371
MboI	GATC	2 cut(s)	122, 369
MboII	GAAGA	3 cut(s)	45, 116, 178
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	75, 314, 327
MroI	TCCGGA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	5 cut(s)	57, 63, 71, 261, 427
MspR9I	CCNGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	221, 361, 372
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	2 cut(s)	122, 369
NgoMIV	GCCGGC	1 cut(s)	260
NlaIV	GGNNCC	3 cut(s)	6, 61, 244
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	88
NsbI	TGCGCA	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	10, 98, 110, 302
PkrI	GCNGC	7 cut(s)	26, 45, 143, 180, 273, 357, 379
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspFI	CCCAGC	2 cut(s)	339, 395
PspN4I	GGNNCC	3 cut(s)	6, 61, 244
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	43
SatI	GCNGC	7 cut(s)	25, 44, 142, 179, 272, 356, 378
Sau3AI	GATC	2 cut(s)	122, 369
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	3 cut(s)	95, 317, 334
TaqI	TCGA	2 cut(s)	18, 308
TaqII	GACCGA	1 cut(s)	39
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	4 cut(s)	10, 98, 110, 302
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	6 cut(s)	24, 43, 141, 271, 355, 377
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.