Rh6DG218700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002526
Physical Location & Seq
Reverse (-)
38941028 .. 38941550
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG218700.1

Sequence Viewer

Length: 432 bp
ATGGACCCGAATCGGGTCGAGGGCAGCAACCGGGTCGTCCAGTTGCGTCGGTCTTCCGGAGCCGGGTTGCCGGTGCAGACGAGTGAAGTGATGTCGGAATCCGAAGAGGAATCCGGTCTGAGATCGGTGAGTCTCAAGGGCAGCACCTCGGAGGCGTGCGTGGAATGGGCAGTAGCGCGGCCGGTCTTCTGGGTCGGGCTGAGTAGCGTGCTGGCACGGTTTGCAGGCTGGCTGAGGCGAGGAGCCACGCTGAGGTTGGCCGGCTGTGGGCTGCGCCGAGGTTGGGTCGGTGCTGGAGGCGAATCACCGGCGACGTGGATTGGTTGGGCACGTCGGAGCTGGGCGTTGGAGGTGCAGCGTAGGCGCTGGATCTGCGCAACAGGTGGGCTAGAGGCTGGGCAGGGCTTTGCCGGTGAATGTCTGTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.47

Weight (kDa)

9.89

Isoelectric Point (pI)

82.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 376
AccII CGCG 1 cut(s) 178
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 377
AcoI YGGCCR 2 cut(s) 179, 258
AfiI CCNNNNNNNGG 5 cut(s) 13, 63, 252, 267, 283
AjiI CACGTC 2 cut(s) 315, 332
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 2 cut(s) 179, 258
ApeKI GCWGC 4 cut(s) 24, 141, 271, 355
AspLEI GCGC 4 cut(s) 178, 276, 366, 377
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 32, 64
AsuHPI GGTGA 3 cut(s) 139, 297, 425
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 331
BbsI GAAGAC 2 cut(s) 45, 178
BbvCI CCTCAGC 2 cut(s) 233, 251
BbvI GCAGC 4 cut(s) 36, 153, 258, 367
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BcnI CCSGG 2 cut(s) 32, 64
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 389
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 5 cut(s) 25, 142, 179, 272, 356
BlsI GCNGC 5 cut(s) 26, 143, 180, 273, 357
Bme1390I CCNGG 2 cut(s) 32, 64
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 2 cut(s) 315, 332
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 61, 244
BmrFI CCNGG 2 cut(s) 32, 64
BpiI GAAGAC 2 cut(s) 45, 178
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 2 cut(s) 233, 251
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 32, 64
BsaJI CCNNGG 2 cut(s) 147, 277
BsaWI WCCGGW 2 cut(s) 56, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 63, 252, 267, 283
Bse118I RCCGGY 6 cut(s) 70, 181, 260, 307, 410, 426
Bse1I ACTGG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 147, 277
BseLI CCNNNNNNNGG 5 cut(s) 13, 63, 252, 267, 283
BseMII CTCAG 4 cut(s) 110, 191, 224, 242
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 331
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 36, 153, 258, 367
BseYI CCCAGC 2 cut(s) 339, 395
BsgI GTGCAG 2 cut(s) 95, 374
Bsh1236I CGCG 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 181, 260
BsiEI CGRYCG 1 cut(s) 182
BslI CCNNNNNNNGG 5 cut(s) 13, 63, 252, 267, 283
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 181, 260
Bsp1286I GDGCHC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 2 cut(s) 122, 369
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 181, 260
BspCNI CTCAG 4 cut(s) 111, 192, 225, 243
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 6, 61, 244
BspPI GGATC 1 cut(s) 377
BsrFI RCCGGY 6 cut(s) 70, 181, 260, 307, 410, 426
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 6 cut(s) 70, 181, 260, 307, 410, 426
BssECI CCNNGG 2 cut(s) 147, 277
BssMI GATC 2 cut(s) 122, 369
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 6 cut(s) 157, 209, 213, 226, 230, 262
BstDEI CTNAG 4 cut(s) 119, 200, 233, 251
BstFNI CGCG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 4 cut(s) 178, 276, 366, 377
BstKTI GATC 2 cut(s) 125, 372
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 122, 369
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 3 cut(s) 221, 361, 372
BstSCI CCNGG 2 cut(s) 30, 62
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 4 cut(s) 36, 153, 258, 367
BstV2I GAAGAC 2 cut(s) 45, 178
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 181, 260
BtrI CACGTC 2 cut(s) 315, 332
Cac8I GCNNGC 6 cut(s) 157, 209, 213, 226, 230, 262
CfoI GCGC 4 cut(s) 178, 276, 366, 377
Cfr10I RCCGGY 6 cut(s) 70, 181, 260, 307, 410, 426
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 35
DdeI CTNAG 4 cut(s) 119, 200, 233, 251
DpnI GATC 2 cut(s) 124, 371
DpnII GATC 2 cut(s) 122, 369
EaeI YGGCCR 2 cut(s) 179, 258
EagI CGGCCG 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 179
Fnu4HI GCNGC 5 cut(s) 25, 142, 179, 272, 356
Fsp4HI GCNGC 5 cut(s) 25, 142, 179, 272, 356
FspBI CTAG 1 cut(s) 389
FspI TGCGCA 1 cut(s) 376
GlaI GCGC 4 cut(s) 177, 275, 365, 376
GluI GCNGC 5 cut(s) 25, 142, 179, 272, 356
GsaI CCCAGC 2 cut(s) 343, 399
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 2 cut(s) 181, 260
HgaI GACGC 1 cut(s) 35
HhaI GCGC 4 cut(s) 178, 276, 366, 377
Hin6I GCGC 4 cut(s) 176, 274, 364, 375
HinP1I GCGC 4 cut(s) 176, 274, 364, 375
HinfI GANTC 5 cut(s) 10, 98, 110, 130, 302
HphI GGTGA 3 cut(s) 139, 297, 425
Hpy188I TCNGA 5 cut(s) 97, 103, 120, 151, 336
Hpy188III TCNNGA 1 cut(s) 57
Hpy99I CGWCG 3 cut(s) 51, 316, 336
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 314, 331
HpyCH4V TGCA 3 cut(s) 76, 224, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 361, 372
HpyF3I CTNAG 4 cut(s) 119, 200, 233, 251
HpySE526I ACGT 2 cut(s) 314, 331
HspAI GCGC 4 cut(s) 176, 274, 364, 375
Kpn2I TCCGGA 1 cut(s) 56
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 122, 369
LmnI GCTCC 3 cut(s) 59, 242, 336
Lsp1109I GCAGC 4 cut(s) 36, 153, 258, 367
MaeI CTAG 1 cut(s) 389
MaeII ACGT 2 cut(s) 314, 331
MalI GATC 2 cut(s) 124, 371
MboI GATC 2 cut(s) 122, 369
MboII GAAGA 3 cut(s) 45, 116, 178
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 331
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 3 cut(s) 75, 314, 327
MroI TCCGGA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 32, 64
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 221, 361, 372
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 32, 64
NdeII GATC 2 cut(s) 122, 369
NgoMIV GCCGGC 1 cut(s) 260
NlaIV GGNNCC 3 cut(s) 6, 61, 244
NmeAIII GCCGAG 1 cut(s) 302
NsbI TGCGCA 1 cut(s) 376
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 4 cut(s) 10, 98, 110, 302
PkrI GCNGC 5 cut(s) 26, 143, 180, 273, 357
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspFI CCCAGC 2 cut(s) 339, 395
PspN4I GGNNCC 3 cut(s) 6, 61, 244
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 369
SatI GCNGC 5 cut(s) 25, 142, 179, 272, 356
Sau3AI GATC 2 cut(s) 122, 369
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 32, 64
SduI GDGCHC 1 cut(s) 331
SetI ASST 8 cut(s) 149, 257, 283, 317, 334, 341, 354, 385
SgrAI CRCCGGYG 1 cut(s) 307
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 30, 62
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 317, 334
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 1 cut(s) 39
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 4 cut(s) 10, 98, 110, 302
TseI GCWGC 4 cut(s) 24, 141, 271, 355
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.