Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002526

Physical Location & Seq

Genomic Coordinates Forward (+)

43043359 .. 43049141

Gene Structure 5783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTAGGCTCTCATGGATTTCCGTTGCTTTCTTTGTCATCCTTGCCTTCGCAATCAATACTTTGGCTCAATGGGATATCGATCAAAGTCCTGCTCCTGCTGTTCAAATTGTTCCTAATGCGCGGGAGCGTGTGATTTTCGGTGTTCAGCAACTTCACACAAGAAGCCATGTCTGTTCTTTTGCAATATGTGTTGTCAAAAATGTCTCTGTGTCCCATCGGGCACATATGGACACAAAGAAGAATGTCCATGCTACAACAACTGGAAAACCCAGGAAGGAGAGAGAGAAGGATCGGGAGAGAGCTCAGGCTCGGGGCGGCAAGGGTAGCAAGAACAAAGACGATGGCTTGACCCCAGAACAGCGCCGAGAGAGGGATGCCAAAGCACTCCAAGAAAAGCTGGCCAAGAAGGCTGATAAGGGTGCAGGGGCTGCCGGAGCTAACTCCTCCTCTGGAGGTAAAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5

Protein Analysis

156

Amino Acids

17.03

Weight (kDa)

10.32

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24100 AT4G13615
fragaria_vesca	FvH4_4g16450
malus_domestica	MD04G1009100.v1.1 MD05G1174200.v1.1
prunus_persica	Prupe.1G008500_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1 Prupe.8G201600_v2.0.a1
pyrus_communis	pycom05g16100 pycom10g14050
rosa_laevigata	RLG00000008089 RLG00000012737
rosa_multiflora	Rmu_sc0001246.1_g000004 Rmu_sc0003368.1_g000062 Rmu_sc0005257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359030 Rroxscaffold_7G00184600
rosa_rugosa	Rorug04G0132500 Rorug04G0132500 Rorug06G0164300
rosa_samantha	Rh1AG238900 Rh4AG193000 Rh4BG191300 Rh4CG034900 Rh4CG203800 Rh4DG190800 Rh5BG441000 Rh5CG463600 Rh6AG277400 Rh6BG277400 Rh6CG227800 Rh6CG279600 Rh6DG187400 Rh6DG218700 Rh6DG272000
rosa_wichuraiana	Rw6G023830 Rw7G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	124
AciI	CCGC	2 cut(s)	124, 318
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	305, 400, 440
AluI	AGCT	3 cut(s)	305, 400, 440
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	431
AspLEI	GCGC	2 cut(s)	124, 366
AvaI	CYCGRG	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	225, 338
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	319, 432
BlsI	GCNGC	2 cut(s)	320, 433
Bme1390I	CCNGG	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	39, 382
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	436, 439
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	404
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	226, 307
Bsp143I	GATC	2 cut(s)	82, 292
BspACI	CCGC	2 cut(s)	124, 318
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	82, 292
Bst2UI	CCWGG	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	39, 382
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	124, 366
BstKTI	GATC	2 cut(s)	85, 295
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	82, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 410, 431, 437
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	39, 382
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	2 cut(s)	124, 366
ClaI	ATCGAT	1 cut(s)	81
CviAII	CATG	3 cut(s)	15, 170, 251
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	84, 294
DpnII	GATC	2 cut(s)	82, 292
EaeI	YGGCCR	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	3 cut(s)	18, 173, 254
FaiI	YATR	6 cut(s)	16, 171, 190, 228, 230, 252
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	14, 169, 250
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	319, 432
FokI	GGATG	2 cut(s)	26, 389
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	319, 432
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	123, 365
GluI	GCNGC	2 cut(s)	319, 432
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	2 cut(s)	124, 366
Hin1II	CATG	3 cut(s)	18, 173, 254
Hin6I	GCGC	2 cut(s)	122, 364
HinP1I	GCGC	2 cut(s)	122, 364
HpaII	CCGG	1 cut(s)	435
Hpy188III	TCNNGA	2 cut(s)	296, 453
HpyAV	CCTTC	4 cut(s)	58, 271, 283, 403
HpyCH4V	TGCA	2 cut(s)	185, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 410, 431, 437
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	18, 173, 254
HspAI	GCGC	2 cut(s)	122, 364
Kzo9I	GATC	2 cut(s)	82, 292
LmnI	GCTCC	3 cut(s)	100, 127, 437
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	84, 294
MboI	GATC	2 cut(s)	82, 292
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	226, 307
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	404
MnlI	CCTC	4 cut(s)	366, 449, 457, 460
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	327, 410, 431, 437
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	82, 292
NlaIII	CATG	3 cut(s)	18, 173, 254
NmeAIII	GCCGAG	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	320, 433
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	307
SatI	GCNGC	2 cut(s)	319, 432
Sau3AI	GATC	2 cut(s)	82, 292
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	226, 307
SetI	ASST	4 cut(s)	307, 402, 442, 460
SfaNI	GCATC	1 cut(s)	367
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	124, 318
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	13
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.