AT3G26660

lob domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
9797129 .. 9797620
492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26660.1

Sequence Viewer

Length: 366 bp
ATGAATCCAAAAAGATGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTCCAAAAGATTGCGTATTCTCACCATATTTCCCTCCAAACGATCCTCAAAAATTTGCATGTGTCCACAGAATCTATGGTGCTGGAAACGTTTCCAAAATGCTTCAGCAACTTCCTGATCAGACAAGAGCTGAAGCAGTGGAATCTTTGTGCTTTGAAGCAAAATGCAGAGTAGATGACCCTGTTTATGGTTGTGTTGGCATTATTCATTTACTTAAAACTCAGATTCAGAAAACTCAGAATGAATTAGCCAAAACTCAAGCTGAGATTGCTGTTGCTCAAACCAAACTTAGCCAAACCCAAAATTCTGATTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

8.96

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 5 - 102 8.5e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 135
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 98, 349
AcuI CTGAAG 2 cut(s) 134, 198
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 3 cut(s) 23, 176, 308
AluI AGCT 3 cut(s) 23, 176, 308
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 2 cut(s) 98, 349
Asp700I GAANNNNTTC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 60
BbvI GCAGC 1 cut(s) 32
BclI TGATCA 1 cut(s) 163
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 4 cut(s) 26, 281, 296, 300
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 233
Bsp143I GATC 2 cut(s) 88, 163
BspCNI CTCAG 4 cut(s) 27, 280, 295, 301
BspPI GGATC 1 cut(s) 83
BssMI GATC 2 cut(s) 88, 163
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 35, 267, 282, 309, 335
BstKTI GATC 2 cut(s) 91, 166
BstMBI GATC 2 cut(s) 88, 163
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 25
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 23, 176, 296, 308, 339
CviKI_1 RGCY 5 cut(s) 23, 176, 296, 308, 339
DdeI CTNAG 5 cut(s) 35, 267, 282, 309, 335
DpnI GATC 2 cut(s) 90, 165
DpnII GATC 2 cut(s) 88, 163
Eco57I CTGAAG 2 cut(s) 134, 198
FaeI CATG 1 cut(s) 108
FaiI YATR 5 cut(s) 73, 106, 123, 234, 362
FatI CATG 1 cut(s) 104
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 108
HinfI GANTC 4 cut(s) 4, 117, 188, 271
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 6 cut(s) 36, 168, 270, 276, 285, 355
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 20, 27, 104, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 5 cut(s) 35, 267, 282, 309, 335
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 88, 163
LpnPI CCDG 3 cut(s) 114, 174, 240
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 90, 165
MboI GATC 2 cut(s) 88, 163
MboII GAAGA 2 cut(s) 51, 54
MluCI AATT 3 cut(s) 98, 290, 349
MnlI CCTC 2 cut(s) 90, 102
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 2 cut(s) 88, 163
NlaIII CATG 1 cut(s) 108
NspI RCATGY 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 4 cut(s) 4, 117, 188, 271
PkrI GCNGC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 135
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 88, 163
SetI ASST 4 cut(s) 25, 138, 178, 310
SgeI CNNG 8 cut(s) 36, 40, 117, 141, 173, 183, 239, 317
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 3 cut(s) 98, 290, 349
TaiI ACGT 1 cut(s) 138
TasI AATT 3 cut(s) 98, 290, 349
TfiI GAWTC 4 cut(s) 4, 117, 188, 271
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 17, 242, 303
TspRI CASTG 1 cut(s) 189
XapI RAATTY 2 cut(s) 98, 349
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.