Prupe.2G014200_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001432
Physical Location & Seq
Reverse (-)
1258279 .. 1259278
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G014200.1

Sequence Viewer

Length: 381 bp
ATGTCTGGTCGTTGTGCTGCGTGCAAGTATTTGAGAAGGAGATGCCCTTCAGATTGCATACTCTCTCCCTATTTTCCGTCCAGTGATCCTCAAAGATTTACTTCTGTTAATAGAATCTATGGTGCCAGCAATGTTGCCAAAATGCTCCAGGAACTCATCATGCCCCATCTAAGAGCTGAAGCAGCAGAGACCTTGCGTTATGAGGCTCAGTGTAGAATACAGGATCTTATCTATGGCTGCATTGGGGTTATTTCCCAATTATACATCAACAAATACAAGATATATACAGAATGTCGATTAGCTAAAACACGTGCTGAAATTGCCCTCATGAACTCTGATGGACAAGAACCTCCTCAAGCTCAAGTTGATCAGCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

127

Amino Acids

14.36

Weight (kDa)

8.71

Isoelectric Point (pI)

67.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AclWI GGATC 2 cut(s) 80, 231
AcuI CTGAAG 2 cut(s) 33, 198
AcvI CACGTG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 176, 302, 359
AluI AGCT 3 cut(s) 176, 302, 359
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 80, 231
ApeKI GCWGC 3 cut(s) 17, 182, 237
BanI GGYRCC 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 4, 194, 224
BccI CCATC 2 cut(s) 174, 332
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 3 cut(s) 18, 183, 238
BlsI GCNGC 3 cut(s) 19, 184, 239
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 339, 345
BsaAI YACGTR 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 3 cut(s) 4, 194, 224
BshNI GGYRCC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 85, 223, 367
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 2 cut(s) 80, 231
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 81
BssMI GATC 3 cut(s) 85, 223, 367
Bst2UI CCWGG 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 22, 127
BstDEI CTNAG 2 cut(s) 170, 207
BstKTI GATC 3 cut(s) 88, 226, 370
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 85, 223, 367
BstMWI GCNNNNNNNGC 2 cut(s) 182, 320
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 4, 194, 224
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 88, 215
Cac8I GCNNGC 2 cut(s) 22, 127
CciI TCATGA 1 cut(s) 327
CviAII CATG 2 cut(s) 160, 328
CviJI RGCY 5 cut(s) 176, 206, 237, 302, 359
CviKI_1 RGCY 5 cut(s) 176, 206, 237, 302, 359
DdeI CTNAG 2 cut(s) 170, 207
DpnI GATC 3 cut(s) 87, 225, 369
DpnII GATC 3 cut(s) 85, 223, 367
Eco31I GGTCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 33, 198
Eco72I CACGTG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 163, 331
FaiI YATR 9 cut(s) 59, 120, 161, 201, 234, 262, 283, 285, 329
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 2 cut(s) 159, 327
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 18, 183, 238
Fsp4HI GCNGC 3 cut(s) 18, 183, 238
GluI GCNGC 3 cut(s) 18, 183, 238
GsuI CTGGAG 1 cut(s) 131
Hin1II CATG 2 cut(s) 163, 331
HinfI GANTC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 52, 337
Hpy188III TCNNGA 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 30, 57
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 24, 57, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 320
HpyF3I CTNAG 2 cut(s) 170, 207
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 2 cut(s) 163, 331
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 3 cut(s) 85, 223, 367
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 94, 134, 139, 161, 206
Lsp1109I GCAGC 3 cut(s) 4, 194, 224
LweI GCATC 1 cut(s) 32
MaeII ACGT 1 cut(s) 310
MalI GATC 3 cut(s) 87, 225, 369
MboI GATC 3 cut(s) 85, 223, 367
MflI RGATCY 1 cut(s) 223
MluCI AATT 2 cut(s) 257, 318
MnlI CCTC 5 cut(s) 99, 196, 335, 360, 363
MseI TTAA 2 cut(s) 108, 379
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 182, 320
NdeII GATC 3 cut(s) 85, 223, 367
NlaIII CATG 2 cut(s) 163, 331
NlaIV GGNNCC 1 cut(s) 124
PagI TCATGA 1 cut(s) 327
PfeI GAWTC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 3 cut(s) 19, 184, 239
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 147
PspCI CACGTG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 223
SaqAI TTAA 2 cut(s) 108, 379
SatI GCNGC 3 cut(s) 18, 183, 238
Sau3AI GATC 3 cut(s) 85, 223, 367
ScrFI CCNGG 1 cut(s) 149
SetI ASST 6 cut(s) 178, 194, 304, 313, 352, 361
SfaNI GCATC 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 354, 360
SmoI CTYRAG 2 cut(s) 354, 360
Sse9I AATT 2 cut(s) 257, 318
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 257, 318
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 108, 379
Tru9I TTAA 2 cut(s) 108, 379
TscAI CASTG 2 cut(s) 88, 215
TseI GCWGC 3 cut(s) 17, 182, 237
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 88, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.