Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

4090791 .. 4091295

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCCGGAAGATTGCATTTTCGCTCCCTATTTTCCCCCAACAATCCTCAAAGATTTGAACATGTTCATAGAATCTATGGTGCCAAGAATGTTGCCACCTTGCTTAAGGAATTGGAATCACTGCAACCGTATTATCGAGCTCAAGCCATTGAAACTTTATGTTATGAGGCTGAAAGTAGAATACAAAATCCTGTGTATGGCTGCGCTGCCATTATTTTCCACTTACAACAGCAAATACATAACATAGAATCTGAATTAGCCAAAATACGTGCTGAGATTGCAGTTCTTAGCTCTAATGGACGAGGACAAGGAGCATCTGATCGAGATGCAGCCGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

6.96

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 90	1.7e-22	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	5
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflII	CTTAAG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	59, 152
AluBI	AGCT	2 cut(s)	140, 291
AluI	AGCT	2 cut(s)	140, 291
Alw21I	GWGCWC	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	201, 206, 329
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	188, 193
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	3 cut(s)	202, 207, 330
BlsI	GCNGC	3 cut(s)	203, 208, 331
BmcAI	AGTACT	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	316, 323
BpuEI	CTTGAG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	188, 193
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	104
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	273, 287
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	188, 193
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	7 cut(s)	140, 146, 170, 201, 260, 291, 332
CviKI_1	RGCY	7 cut(s)	140, 146, 170, 201, 260, 291, 332
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	273, 287
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	1 cut(s)	65
FaiI	YATR	8 cut(s)	63, 69, 78, 160, 165, 198, 240, 245
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	202, 207, 330
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	202, 207, 330
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	202, 207, 330
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	72, 116, 248
HpaII	CCGG	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	253, 319
Hpy188III	TCNNGA	2 cut(s)	6, 323
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	16, 124, 281, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	273, 287
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	204
Kpn2I	TCCGGA	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	29, 311
LpnPI	CCDG	2 cut(s)	19, 204
Lsp1109I	GCAGC	2 cut(s)	188, 193
LweI	GCATC	2 cut(s)	316, 323
MaeII	ACGT	1 cut(s)	268
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	110, 254
MnlI	CCTC	3 cut(s)	57, 160, 296
MroI	TCCGGA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	72, 116, 248
PkrI	GCNGC	3 cut(s)	203, 208, 331
Ppu21I	YACGTR	1 cut(s)	269
PscI	ACATGT	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	202, 207, 330
Sau3AI	GATC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	101, 142, 271, 293
SfaNI	GCATC	2 cut(s)	316, 323
SmlI	CTYRAG	2 cut(s)	104, 141
SmoI	CTYRAG	2 cut(s)	104, 141
Sse9I	AATT	2 cut(s)	110, 254
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	136, 322
TasI	AATT	2 cut(s)	110, 254
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	72, 116, 248
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	3 cut(s)	201, 206, 329
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	104
XceI	RCATGY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.