Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

24970873 .. 24971909

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTGATAAGAAAACTATATATATTTGTTTTTCAATTAGGAATCCTATAGATGCTTTGGCTACCCTTCGAGAGCAGAAGGGCGCATTTGATCTTGTTGTTACCGACCTCCATATGCCTGAGATGGATGGATTTGAATTGCAAAAGCATGTTCGTGACGAGTTTAAGCTACCTGTTATTAGTGAGTTGATGTCCGCAGATGACAACGAGAGTGTGATACTAAAGAGTTTAGAGGGTGGAGTTGCTTACTATATAGTAAAGCCTGTGAGCAAAGATGACATTAAAAATGTGTGGCAGTATGCTGTGGCGGCTAAGAAAGGTAAATCTGTTGTCATAGGGGAAATAGAAGGTGCTCCAAGAGAAGCACCTGGTGAGGTCGACGATGGAAGTAACTCTGAGATATCTTCAGATACTAATGAGGAACAACATAAAAAAAAGGCCGAGGTAAAGACGAAGAAGGCAAAAAAGAGAGGTAGGGAAGACGATAATGAAGAACGCATGCTTGCACCAAAGAAGCCAAAAGTGGTTTGGATAAACTCACTTCACTATCAGTTTCTGTTGGCCATTAGACACATCGGCCTTGACAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

198

Amino Acids

22.18

Weight (kDa)

6.0

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	8 - 96	2.8e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	2 cut(s)	195, 308
AcoI	YGGCCR	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	36, 137
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	556
AoxI	GGCC	3 cut(s)	438, 561, 577
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	355
BccI	CCATC	3 cut(s)	118, 122, 377
BciT130I	CCWGG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	111, 387
BshFI	GGCC	3 cut(s)	440, 563, 579
BsiHKAI	GWGCWC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	440, 563, 579
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	2 cut(s)	195, 308
BspANI	GGCC	3 cut(s)	440, 563, 579
BspCNI	CTCAG	2 cut(s)	112, 388
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	500, 504
BstDEI	CTNAG	3 cut(s)	120, 312, 396
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	2 cut(s)	152, 502
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	440, 563, 579
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	500, 504
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	2 cut(s)	149, 499
CviJI	RGCY	8 cut(s)	62, 169, 262, 311, 440, 517, 563, 579
CviKI_1	RGCY	8 cut(s)	62, 169, 262, 311, 440, 517, 563, 579
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	3 cut(s)	120, 312, 396
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	402
FaeI	CATG	2 cut(s)	152, 502
FatI	CATG	2 cut(s)	148, 498
FauNDI	CATATG	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	309
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	440, 563, 579
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	152, 502
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	397, 409
Hpy188III	TCNNGA	2 cut(s)	71, 155
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	4 cut(s)	73, 77, 341, 451
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	142, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	120, 312, 396
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	2 cut(s)	152, 502
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	5 cut(s)	132, 186, 276, 354, 381
LweI	GCATC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	367
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	100, 155, 389
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	4 cut(s)	396, 466, 491, 503
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	2 cut(s)	36, 137
MluNI	TGGCCA	1 cut(s)	563
MnlI	CCTC	6 cut(s)	119, 226, 367, 412, 436, 464
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	2 cut(s)	165, 282
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	152, 502
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	152, 502
PaeI	GCATGC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	165, 282
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	355
SexAI	ACCWGGT	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	2 cut(s)	36, 137
SsiI	CCGC	2 cut(s)	195, 308
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	70, 378
TasI	AATT	2 cut(s)	36, 137
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	165, 282
Tru9I	TTAA	2 cut(s)	165, 282
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	504
XceI	RCATGY	2 cut(s)	152, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.