Rh1DG404700
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001432
Physical Location & Seq
Forward (+)
62392885 .. 62398055
5171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG404700.1

Sequence Viewer

Length: 1638 bp
ATGAACAACGCCACGAGAAACATCAACAACATTTCTCTGGCCAATGATGACGATGACATCATGGTGATCAATAATCTGGTCTTGCAGCAGCTCGACAACTGCCATCCTCCTTCTCATCAGAAACAAGGTGGGGAAGAAGTTCCTGTCAGCATCACTAGCATGTTATATCAAGATGAAGATCCTGCACCTACTCCTACAATCGATGCACAAGTTCAGCTGAACACTAATCGTGCTGCAAATGGTCTAGTTCAGCTGACCCCTAATCATGTTGCAAATAGTCAAGTTCAGCTGAACCCTAATCCTTCTTTGAATGGCGAAGTTCATCAGCTTAACCCTAATCCTTTTGCGAATGTTCAAGTTCAGCTGAACCCCAATCCTTTTGTGAACGGCCAAAATCAGCAGAACCGTAATCCTGATGCAAGTAGTCAACTTGAGCTGAACCCTTCACCTCCTCCTACTGTCAACTCCCAAGTTCAGCGCAGCCTTAACTCTGCTGTGAACGATGAAGCTCAGCTGAACCCTAATCTTTATATGAACGATCTAAACTCTAATGCTGCTGCAAACCGTCAGCTTGACCTGAACCTTGGGAACCCTTACTTGAGCTCTAGTCCTGCTGCTAACAGTCAGCTTGCTGAGCTGAACCCAACTGCCAACCAAGTTGGGAACCCTAAAATTTTTGGCTTAGGCTCGTACCATATGGAAGATAATGCACCAGATGATGAGCAATCTTGGAGCCTGGAGGAGCAGGGTGGTGATCAACAGATACTCAACTCCGAGTTCAATAGCAACATGTTTCAGACAGATGACTGTTCTAGTCTATTTGATCAACAATTCGCTGCTCAGGCAAGTCAAGGACTCAAACTCTATACCCCACTGACACCATATTTTCGAGCTCAAGCCGCCGAGACTTTATGTTATGAGGCTGAAAGTAGAATACACGATCCTGTGTATGGCTGCGCTGCGATTATTTTCCAATTACAGCAGCAAATATATAACACAGAATCTGAATTAGCCAAAACACGTGCTGAGATTGCAGTTATTAGATCTAATGGAAAAGGAAAAGAACCAGAGGTTCAGCCAAGTACTGATCAAGTTCATGATGGGTTTAGGGCCTGCCCTCAGAGTACCATGATGAGACACTTACTTCCCCCTGAAATGGCTTCATTAGATGTGGTGCAGAATATGGTAAACAATGAAGCTATGGTTGTCTTTCCTCAACCGGTGGTCCCTTATAGCTATGCACAAGCTGCTGCAGGAACATCAAATGGCCAGGCTGCACAATCTGAACCTCCTTTTTCAACCTGGACTGCTGTTTCTCGCTGGCGTGGTAGCGGTGCTGGGAAAGTCTTTGCTGGAAGAGGTGCTGGTAGTTCCACCATGGGGAACCGTACTTTGCGTATCAATGAAGAAGGTAACAATCAACCAAGGGATATGCGAGCTGTAAACAGAAATGGCAGTGTGATTGGCCTCTTTGATCGTGAGATTGATCAGTTCCAAGGTGCAAATGAGGAAATTAATCTTGATTTGGACTTGGCGGCTAACCACAACAGTATGCTGCTTGATCGAAACAATAGTGAAGGCACTGAGGAGGACCAGTTTGTTGAAAATGCTTTAAAGGACCCTAGCTATGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

545

Amino Acids

59.66

Weight (kDa)

4.42

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 286 - 341 3.9e-11 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 900, 1332, 1535
AclWI GGATC 2 cut(s) 173, 935
AcoI YGGCCR 3 cut(s) 39, 388, 1267
AcsI RAATTY 1 cut(s) 672
AcvI CACGTG 1 cut(s) 1022
AfaI GTAC 4 cut(s) 692, 1084, 1126, 1390
AfiI CCNNNNNNNGG 3 cut(s) 950, 1156, 1380
AflIII ACRYGT 2 cut(s) 789, 1019
AgeI ACCGGT 1 cut(s) 1219
AgsI TTSAA 5 cut(s) 310, 356, 781, 1299, 1604
AjnI CCWGG 3 cut(s) 735, 1269, 1301
Alw21I GWGCWC 2 cut(s) 605, 895
Alw26I GTCTC 2 cut(s) 899, 1129
AlwI GGATC 2 cut(s) 173, 935
AlwNI CAGNNNCTG 1 cut(s) 1004
AoxI GGCC 5 cut(s) 39, 388, 1110, 1267, 1465
ApoI RAATTY 1 cut(s) 672
AseI ATTAAT 1 cut(s) 1515
AsiGI ACCGGT 1 cut(s) 1219
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 2 cut(s) 480, 959
AspS9I GGNCC 4 cut(s) 1110, 1225, 1591, 1618
AsuHPI GGTGA 3 cut(s) 76, 438, 764
AvaII GGWCC 3 cut(s) 1225, 1591, 1618
BalI TGGCCA 2 cut(s) 41, 1269
BanII GRGCYC 2 cut(s) 605, 895
BauI CACGAG 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 1022
Bbv12I GWGCWC 2 cut(s) 605, 895
BccI CCATC 2 cut(s) 111, 1094
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 3 cut(s) 737, 1271, 1303
BclI TGATCA 5 cut(s) 66, 754, 823, 1087, 1486
BcoDI GTCTC 2 cut(s) 899, 1129
BfaI CTAG 5 cut(s) 156, 245, 606, 813, 1623
BfmI CTRYAG 1 cut(s) 1251
BglII AGATCT 1 cut(s) 1043
BlpI GCTNAGC 2 cut(s) 510, 633
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 3 cut(s) 737, 1271, 1303
Bme18I GGWCC 3 cut(s) 1225, 1591, 1618
BmgT120I GGNCC 4 cut(s) 1110, 1225, 1591, 1618
BmiI GGNNCC 6 cut(s) 590, 665, 734, 1227, 1385, 1620
BmrFI CCNGG 3 cut(s) 737, 1271, 1303
BmsI GCATC 3 cut(s) 159, 193, 406
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 2 cut(s) 682, 840
Bpu1102I GCTNAGC 2 cut(s) 510, 633
BpuEI CTTGAG 3 cut(s) 452, 619, 879
Bsa29I ATCGAT 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 1022
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 583, 1377, 1424, 1495
BsaWI WCCGGW 1 cut(s) 1219
BsaXI ACNNNNNCTCC 2 cut(s) 1580, 1610
Bsc4I CCNNNNNNNGG 3 cut(s) 950, 1156, 1380
Bse118I RCCGGY 1 cut(s) 1219
Bse1I ACTGG 1 cut(s) 1594
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 3 cut(s) 737, 1271, 1303
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 583, 1377, 1424, 1495
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 950, 1156, 1380
BseMII CTCAG 6 cut(s) 524, 624, 854, 1017, 1133, 1575
BseNI ACTGG 1 cut(s) 1594
BseRI GAGGAG 3 cut(s) 441, 755, 1601
BseYI CCCAGC 1 cut(s) 1337
BsgI GTGCAG 3 cut(s) 168, 1196, 1260
BshFI GGCC 5 cut(s) 41, 390, 1112, 1269, 1467
BshTI ACCGGT 1 cut(s) 1219
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 605, 895
BsiSI CCGG 1 cut(s) 1220
BslFI GGGAC 1 cut(s) 1211
BslI CCNNNNNNNGG 3 cut(s) 950, 1156, 1380
BsmAI GTCTC 2 cut(s) 899, 1129
BsmFI GGGAC 1 cut(s) 1211
BsnI GGCC 5 cut(s) 41, 390, 1112, 1269, 1467
Bsp1286I GDGCHC 2 cut(s) 605, 895
Bsp1720I GCTNAGC 2 cut(s) 510, 633
Bsp19I CCATGG 1 cut(s) 1377
BspACI CCGC 3 cut(s) 900, 1332, 1535
BspANI GGCC 5 cut(s) 41, 390, 1112, 1269, 1467
BspCNI CTCAG 6 cut(s) 523, 625, 853, 1018, 1132, 1576
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 6 cut(s) 590, 665, 734, 1227, 1385, 1620
BspMAI CTGCAG 1 cut(s) 1255
BspPI GGATC 2 cut(s) 173, 935
BsrFI RCCGGY 1 cut(s) 1219
BsrI ACTGG 1 cut(s) 1594
BssAI RCCGGY 1 cut(s) 1219
BssECI CCNNGG 4 cut(s) 583, 1377, 1424, 1495
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 4 cut(s) 583, 1377, 1424, 1495
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 3 cut(s) 737, 1271, 1303
Bst4CI ACNGT 7 cut(s) 407, 460, 566, 623, 809, 1388, 1550
Bst6I CTCTTC 1 cut(s) 1351
BstAPI GCANNNNNTGC 1 cut(s) 1247
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 4 cut(s) 630, 1114, 1322, 1437
BstDEI CTNAG 7 cut(s) 510, 633, 682, 840, 1026, 1119, 1584
BstDSI CCRYGG 1 cut(s) 1377
BstF5I GGATG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 480, 959
BstMAI GTCTC 2 cut(s) 899, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 156, 634, 842, 899, 1031, 1247
BstNI CCWGG 3 cut(s) 737, 1271, 1303
BstNSI RCATGY 2 cut(s) 163, 793
BstSCI CCNGG 3 cut(s) 735, 1269, 1301
BstSFI CTRYAG 1 cut(s) 1251
BstX2I RGATCY 2 cut(s) 178, 1043
BstYI RGATCY 2 cut(s) 178, 1043
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 5 cut(s) 41, 390, 1112, 1269, 1467
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 1377
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 1462
BtsIMutI CAGTG 3 cut(s) 872, 1462, 1581
Cac8I GCNNGC 4 cut(s) 630, 1114, 1322, 1437
CaiI CAGNNNCTG 1 cut(s) 1004
CciI TCATGA 1 cut(s) 1096
CfoI GCGC 2 cut(s) 480, 959
Cfr10I RCCGGY 1 cut(s) 1219
Cfr13I GGNCC 4 cut(s) 1110, 1225, 1591, 1618
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 4 cut(s) 691, 1083, 1125, 1389
CspAI ACCGGT 1 cut(s) 1219
CviAII CATG 7 cut(s) 61, 160, 266, 790, 1097, 1129, 1378
CviQI GTAC 4 cut(s) 691, 1083, 1125, 1389
DdeI CTNAG 7 cut(s) 510, 633, 682, 840, 1026, 1119, 1584
DraI TTTAAA 1 cut(s) 1614
EaeI YGGCCR 3 cut(s) 39, 388, 1267
Eam1104I CTCTTC 1 cut(s) 1351
EarI CTCTTC 1 cut(s) 1351
Ecl136II GAGCTC 2 cut(s) 603, 893
Eco130I CCWWGG 4 cut(s) 583, 1377, 1424, 1495
Eco24I GRGCYC 2 cut(s) 605, 895
Eco47I GGWCC 3 cut(s) 1225, 1591, 1618
Eco53kI GAGCTC 2 cut(s) 603, 893
Eco72I CACGTG 1 cut(s) 1022
EcoICRI GAGCTC 2 cut(s) 603, 893
EcoO109I RGGNCCY 2 cut(s) 1110, 1618
EcoRII CCWGG 3 cut(s) 735, 1269, 1301
EcoT14I CCWWGG 4 cut(s) 583, 1377, 1424, 1495
EcoT38I GRGCYC 2 cut(s) 605, 895
ErhI CCWWGG 4 cut(s) 583, 1377, 1424, 1495
FaeI CATG 7 cut(s) 64, 163, 269, 793, 1100, 1132, 1381
FaqI GGGAC 1 cut(s) 1211
FatI CATG 7 cut(s) 60, 159, 265, 789, 1096, 1128, 1377
FauNDI CATATG 1 cut(s) 696
FbaI TGATCA 5 cut(s) 66, 754, 823, 1087, 1486
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 2 cut(s) 605, 895
FspBI CTAG 5 cut(s) 156, 245, 606, 813, 1623
GlaI GCGC 2 cut(s) 479, 958
GsaI CCCAGC 1 cut(s) 1341
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 5 cut(s) 41, 390, 1112, 1269, 1467
HapII CCGG 1 cut(s) 1220
HhaI GCGC 2 cut(s) 480, 959
Hin1II CATG 7 cut(s) 64, 163, 269, 793, 1100, 1132, 1381
Hin6I GCGC 2 cut(s) 478, 957
HinP1I GCGC 2 cut(s) 478, 957
HincII GTYRAC 2 cut(s) 428, 463
HindII GTYRAC 2 cut(s) 428, 463
HinfI GANTC 2 cut(s) 855, 1001
HpaII CCGG 1 cut(s) 1220
HphI GGTGA 3 cut(s) 76, 438, 764
Hpy166II GTNNAC 6 cut(s) 385, 428, 463, 499, 1189, 1444
Hpy188I TCNGA 6 cut(s) 120, 775, 798, 1006, 1122, 1285
Hpy188III TCNNGA 5 cut(s) 170, 413, 1097, 1478, 1520
Hpy8I GTNNAC 6 cut(s) 385, 428, 463, 499, 1189, 1444
HpyAV CCTTC 5 cut(s) 120, 312, 453, 1403, 1571
HpyCH4III ACNGT 7 cut(s) 407, 460, 566, 623, 809, 1388, 1550
HpyCH4IV ACGT 1 cut(s) 1021
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 634, 842, 899, 1031, 1247
HpyF3I CTNAG 7 cut(s) 510, 633, 682, 840, 1026, 1119, 1584
HpySE526I ACGT 1 cut(s) 1021
Hsp92II CATG 7 cut(s) 64, 163, 269, 793, 1100, 1132, 1381
HspAI GCGC 2 cut(s) 478, 957
Ksp22I TGATCA 5 cut(s) 66, 754, 823, 1087, 1486
LmnI GCTCC 2 cut(s) 732, 742
LweI GCATC 3 cut(s) 159, 193, 406
MaeI CTAG 5 cut(s) 156, 245, 606, 813, 1623
MaeII ACGT 1 cut(s) 1021
MaeIII GTNAC 1 cut(s) 1412
MboII GAAGA 5 cut(s) 146, 188, 713, 1368, 1418
MflI RGATCY 2 cut(s) 178, 1043
MhlI GDGCHC 2 cut(s) 605, 895
MlsI TGGCCA 2 cut(s) 41, 1269
MluCI AATT 5 cut(s) 672, 830, 974, 1007, 1512
MluNI TGGCCA 2 cut(s) 41, 1269
MlyI GAGTC 1 cut(s) 849
Mox20I TGGCCA 2 cut(s) 41, 1269
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 2 cut(s) 41, 1269
MseI TTAA 4 cut(s) 330, 486, 1515, 1613
MslI CAYNNNNRTG 2 cut(s) 62, 158
Msp20I TGGCCA 2 cut(s) 41, 1269
MspA1I CMGCKG 5 cut(s) 217, 253, 289, 364, 514
MspI CCGG 1 cut(s) 1220
MspR9I CCNGG 3 cut(s) 737, 1271, 1303
MvaI CCWGG 3 cut(s) 737, 1271, 1303
MwoI GCNNNNNNNGC 6 cut(s) 156, 634, 842, 899, 1031, 1247
NcoI CCATGG 1 cut(s) 1377
NdeI CATATG 1 cut(s) 696
NlaIII CATG 7 cut(s) 64, 163, 269, 793, 1100, 1132, 1381
NlaIV GGNNCC 6 cut(s) 590, 665, 734, 1227, 1385, 1620
NmeAIII GCCGAG 1 cut(s) 928
NspI RCATGY 2 cut(s) 163, 793
PagI TCATGA 1 cut(s) 1096
PciI ACATGT 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 1001
PinAI ACCGGT 1 cut(s) 1219
PleI GAGTC 1 cut(s) 849
PmaCI CACGTG 1 cut(s) 1022
PmlI CACGTG 1 cut(s) 1022
PpsI GAGTC 1 cut(s) 849
Ppu21I YACGTR 1 cut(s) 1022
PpuMI RGGWCCY 1 cut(s) 1618
PscI ACATGT 1 cut(s) 789
PshBI ATTAAT 1 cut(s) 1515
Psp124BI GAGCTC 2 cut(s) 605, 895
Psp5II RGGWCCY 1 cut(s) 1618
Psp6I CCWGG 3 cut(s) 735, 1269, 1301
PspCI CACGTG 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 1337
PspGI CCWGG 3 cut(s) 735, 1269, 1301
PspN4I GGNNCC 6 cut(s) 590, 665, 734, 1227, 1385, 1620
PspPI GGNCC 4 cut(s) 1110, 1225, 1591, 1618
PspPPI RGGWCCY 1 cut(s) 1618
PstI CTGCAG 1 cut(s) 1255
PstNI CAGNNNCTG 1 cut(s) 1004
PsuI RGATCY 2 cut(s) 178, 1043
PvuII CAGCTG 5 cut(s) 217, 253, 289, 364, 514
RsaI GTAC 4 cut(s) 692, 1084, 1126, 1390
RsaNI GTAC 4 cut(s) 691, 1083, 1125, 1389
RseI CAYNNNNRTG 2 cut(s) 62, 158
SacI GAGCTC 2 cut(s) 605, 895
SaqAI TTAA 4 cut(s) 330, 486, 1515, 1613
Sau96I GGNCC 4 cut(s) 1110, 1225, 1591, 1618
ScaI AGTACT 1 cut(s) 1084
SchI GAGTC 1 cut(s) 849
ScrFI CCNGG 3 cut(s) 737, 1271, 1303
SduI GDGCHC 2 cut(s) 605, 895
SfaNI GCATC 3 cut(s) 159, 193, 406
SfcI CTRYAG 1 cut(s) 1251
SinI GGWCC 3 cut(s) 1225, 1591, 1618
SmiMI CAYNNNNRTG 2 cut(s) 62, 158
SmlI CTYRAG 3 cut(s) 431, 598, 894
SmoI CTYRAG 3 cut(s) 431, 598, 894
Sse9I AATT 5 cut(s) 672, 830, 974, 1007, 1512
SsiI CCGC 3 cut(s) 900, 1332, 1535
SspMI CTAG 5 cut(s) 156, 245, 606, 813, 1623
SstI GAGCTC 2 cut(s) 605, 895
StyD4I CCNGG 3 cut(s) 735, 1269, 1301
StyI CCWWGG 4 cut(s) 583, 1377, 1424, 1495
TaaI ACNGT 7 cut(s) 407, 460, 566, 623, 809, 1388, 1550
TaiI ACGT 1 cut(s) 1024
TaqI TCGA 4 cut(s) 93, 201, 889, 1564
TasI AATT 5 cut(s) 672, 830, 974, 1007, 1512
TatI WGTACW 1 cut(s) 1082
TauI GCSGC 2 cut(s) 902, 1538
TfiI GAWTC 1 cut(s) 1001
Tru1I TTAA 4 cut(s) 330, 486, 1515, 1613
Tru9I TTAA 4 cut(s) 330, 486, 1515, 1613
TscAI CASTG 3 cut(s) 879, 1462, 1588
TspDTI ATGAA 9 cut(s) 17, 189, 311, 519, 548, 1085, 1152, 1209, 1419
TspRI CASTG 3 cut(s) 879, 1462, 1588
VpaK11BI GGWCC 3 cut(s) 1225, 1591, 1618
VspI ATTAAT 1 cut(s) 1515
XapI RAATTY 1 cut(s) 672
XceI RCATGY 2 cut(s) 163, 793
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 5 cut(s) 156, 245, 606, 813, 1623
ZrmI AGTACT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.