Rh1CG387700
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001432
Physical Location & Seq
Forward (+)
65725699 .. 65729354
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG387700.1

Sequence Viewer

Length: 1341 bp
ATGAATGCCAATTTGCAGAAGTACCGCATGTTCTTGAAGCGAGTTGCGGAGAAAGCTAGATTGTCAAAGTGCTTGTCTGAGAGGGTATTCAGGTCAAGCTTGGCATTTGGCCTTCCAGCCACACCGTCTTTCAACCATGCTCAACGGGAACAATATGCTGAATACCTCAAACAACAACTGCAGATGAATGACCTGGGACTCGCACCGCCGTTGCAGAATACCCTAGCACCTCTTGCCACTGCTTCCCACCTTGGCTCGAGCTCGTTGCAATTTCCGCTGAATTACAATCAGCAACCAGCAGCTCTAAACCTAGCTAGCACCAGCAGCGGCCCTCAGTGCCACCAACTCTTTGGCTCGGGGCAGTCGCATCTCTTGGTAAACAATACTGTTCAGCAACAACGTCTAATCCAGCTTGGTAATGGAATGAACACCTTTTCTCAAGCAAACCACGGCTCCGATTTTGGAATGCAGATGATGAACAACAACGTTGGACGCATTGGAAGCTATGGCGGTCTGATGAATAATGGTAGAAATGGCCTTATGAATGGAGGTACTAATTGGATGGATATCTACTCGCAACAAAGTCAAGCCAAGCAGCTTCAACAAGCACTCAATTTCACCTCTAACCCGTTCATTTTTGGGACCACACCCAGAATTTCATCTCCAAGCATTGACAACCTGATGAGTCCCTTTAACAATGCTAATCTGGGGCCAAACTTCGGCGGCAGAACCAGTCAACCTGCTGGTGGATTCAACAACATTATAAACGGTGGATGTAATGGATTGGTCATCAACAATGAAGTTGTCAATGGGTTGACGAACGGAGTTCGTAATGTCAACCTAAATGGTGGGGAAGAAGTTCCTGTCAGCATCACTAGCATGTTATATCAAGATGAAGATCCTGCACCTACTCCTACAATCGATGCACAAGTTCAGCTGAACACTAATCGTGCTGCAAATGGTCTAGTTCAGCTGACCCCTAATCATGTTGCAAATAGTCAAGTTCAGCTGAACCCTAATCCTTCTTTGAATGGCGAAGTTCATCAGCTTAACCCTAATCCTTTTGCGAATGTTCAAGTTCAGCTGAACCCCAATCCTTTTGTGAACGGCCAAAATCAGCAGAACCGTAATCCTGATGCAAGTAGTCAACTTGAGCTGAACCCTTCACCTCCTCCTACTGTCAACTCCCAAGTTCAGCGCAGCCTTAACTCTGCTGTGAACGATGAAGCTCAGCTGAACCCTAATCTTTATATGAACGATCTAAACTCTAATGCTGCTGCAAACCGTCAGCTTGACCTGAACCGTACCCAACTGCCAACCAAGTTGGGAACCCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

446

Amino Acids

48.32

Weight (kDa)

8.44

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 748
AciI CCGC 7 cut(s) 25, 47, 206, 275, 327, 510, 723
AclI AACGTT 1 cut(s) 486
AclWI GGATC 1 cut(s) 893
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 1 cut(s) 654
AfaI GTAC 3 cut(s) 23, 553, 1306
AfiI CCNNNNNNNGG 2 cut(s) 719, 746
AgsI TTSAA 6 cut(s) 37, 133, 602, 754, 1030, 1076
AjnI CCWGG 1 cut(s) 192
Alw21I GWGCWC 1 cut(s) 263
AlwI GGATC 1 cut(s) 893
Ama87I CYCGRG 2 cut(s) 256, 355
AoxI GGCC 5 cut(s) 109, 328, 535, 710, 1108
ApeKI GCWGC 7 cut(s) 299, 324, 595, 953, 1200, 1274, 1277
ApoI RAATTY 1 cut(s) 654
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 1 cut(s) 1200
AspS9I GGNCC 3 cut(s) 329, 642, 710
AsuHPI GGTGA 2 cut(s) 610, 1158
AsuNHI GCTAGC 1 cut(s) 314
AvaI CYCGRG 2 cut(s) 256, 355
AvaII GGWCC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 7 cut(s) 311, 336, 607, 940, 1212, 1261, 1264
BccI CCATC 1 cut(s) 556
BceAI ACGGC 3 cut(s) 193, 466, 1123
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 194
BfaI CTAG 6 cut(s) 57, 224, 311, 315, 876, 965
BfmI CTRYAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 748
BisI GCNGC 9 cut(s) 300, 325, 328, 596, 724, 954, 1201, 1275, 1278
BlpI GCTNAGC 1 cut(s) 1230
BlsI GCNGC 9 cut(s) 301, 326, 329, 597, 725, 955, 1202, 1276, 1279
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 642
BmeT110I CYCGRG 2 cut(s) 256, 355
BmgT120I GGNCC 3 cut(s) 329, 642, 710
BmiI GGNNCC 4 cut(s) 454, 643, 711, 1330
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 4 cut(s) 376, 879, 913, 1126
BmtI GCTAGC 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 1230
BpuEI CTTGAG 2 cut(s) 423, 1172
Bsa29I ATCGAT 1 cut(s) 921
BsaBI GATNNNNATC 2 cut(s) 566, 897
BsaJI CCNNGG 3 cut(s) 193, 250, 448
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 746
Bse1I ACTGG 1 cut(s) 732
Bse8I GATNNNNATC 2 cut(s) 566, 897
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 3 cut(s) 193, 250, 448
BseGI GGATG 2 cut(s) 567, 779
BseJI GATNNNNATC 2 cut(s) 566, 897
BseLI CCNNNNNNNGG 2 cut(s) 719, 746
BseMII CTCAG 3 cut(s) 69, 347, 1244
BseNI ACTGG 1 cut(s) 732
BseRI GAGGAG 1 cut(s) 1161
BseXI GCAGC 7 cut(s) 311, 336, 607, 940, 1212, 1261, 1264
BsgI GTGCAG 1 cut(s) 888
BshFI GGCC 5 cut(s) 111, 330, 537, 712, 1110
BshVI ATCGAT 1 cut(s) 921
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 2 cut(s) 256, 355
BslFI GGGAC 3 cut(s) 210, 655, 672
BslI CCNNNNNNNGG 2 cut(s) 719, 746
BsmFI GGGAC 3 cut(s) 210, 655, 672
BsmI GAATGC 2 cut(s) 10, 471
BsnI GGCC 5 cut(s) 111, 330, 537, 712, 1110
BsoBI CYCGRG 2 cut(s) 256, 355
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 898, 1258
Bsp1720I GCTNAGC 1 cut(s) 1230
BspACI CCGC 7 cut(s) 25, 47, 206, 275, 327, 510, 723
BspANI GGCC 5 cut(s) 111, 330, 537, 712, 1110
BspCNI CTCAG 3 cut(s) 70, 346, 1243
BspDI ATCGAT 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 454, 643, 711, 1330
BspMAI CTGCAG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 893
BsrI ACTGG 1 cut(s) 732
BssECI CCNNGG 3 cut(s) 193, 250, 448
BssMI GATC 2 cut(s) 898, 1258
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 7 cut(s) 126, 388, 770, 1127, 1180, 1286, 1304
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 78, 333, 1230
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 567, 779
BstHHI GCGC 1 cut(s) 1200
BstKTI GATC 2 cut(s) 901, 1261
BstMBI GATC 2 cut(s) 898, 1258
BstMWI GCNNNNNNNGC 7 cut(s) 53, 233, 274, 324, 336, 501, 876
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 31, 883
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 7 cut(s) 311, 336, 607, 940, 1212, 1261, 1264
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 898
Bsu15I ATCGAT 1 cut(s) 921
BsuRI GGCC 5 cut(s) 111, 330, 537, 712, 1110
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 2 cut(s) 567, 779
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 341
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 1 cut(s) 1200
Cfr13I GGNCC 3 cut(s) 329, 642, 710
ClaI ATCGAT 1 cut(s) 921
CseI GACGC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 22, 552, 1305
CviAII CATG 4 cut(s) 28, 137, 880, 986
CviQI GTAC 3 cut(s) 22, 552, 1305
DdeI CTNAG 3 cut(s) 78, 333, 1230
DpnI GATC 2 cut(s) 900, 1260
DpnII GATC 2 cut(s) 898, 1258
EaeI YGGCCR 1 cut(s) 1108
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 261
Eco88I CYCGRG 2 cut(s) 256, 355
EcoICRI GAGCTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 31, 140, 883, 989
FaqI GGGAC 3 cut(s) 210, 655, 672
FatI CATG 4 cut(s) 27, 136, 879, 985
Fnu4HI GCNGC 9 cut(s) 300, 325, 328, 596, 724, 954, 1201, 1275, 1278
FokI GGATG 2 cut(s) 574, 786
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 9 cut(s) 300, 325, 328, 596, 724, 954, 1201, 1275, 1278
FspBI CTAG 6 cut(s) 57, 224, 311, 315, 876, 965
GlaI GCGC 1 cut(s) 1199
GluI GCNGC 9 cut(s) 300, 325, 328, 596, 724, 954, 1201, 1275, 1278
HaeIII GGCC 5 cut(s) 111, 330, 537, 712, 1110
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 1200
Hin1II CATG 4 cut(s) 31, 140, 883, 989
Hin6I GCGC 1 cut(s) 1198
HinP1I GCGC 1 cut(s) 1198
HincII GTYRAC 5 cut(s) 737, 816, 838, 1148, 1183
HindII GTYRAC 5 cut(s) 737, 816, 838, 1148, 1183
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 3 cut(s) 198, 685, 750
HphI GGTGA 2 cut(s) 610, 1158
Hpy166II GTNNAC 8 cut(s) 379, 737, 816, 838, 1105, 1148, 1183, 1219
Hpy188I TCNGA 3 cut(s) 79, 457, 516
Hpy188III TCNNGA 3 cut(s) 34, 890, 1133
Hpy8I GTNNAC 8 cut(s) 379, 737, 816, 838, 1105, 1148, 1183, 1219
HpyAV CCTTC 3 cut(s) 122, 1032, 1173
HpyCH4III ACNGT 7 cut(s) 126, 388, 770, 1127, 1180, 1286, 1304
HpyCH4IV ACGT 2 cut(s) 400, 486
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 233, 274, 324, 336, 501, 876
HpyF3I CTNAG 3 cut(s) 78, 333, 1230
HpySE526I ACGT 2 cut(s) 400, 486
Hsp92II CATG 4 cut(s) 31, 140, 883, 989
HspAI GCGC 1 cut(s) 1198
Kzo9I GATC 2 cut(s) 898, 1258
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 7 cut(s) 311, 336, 607, 940, 1212, 1261, 1264
LweI GCATC 4 cut(s) 376, 879, 913, 1126
MaeI CTAG 6 cut(s) 57, 224, 311, 315, 876, 965
MaeII ACGT 2 cut(s) 400, 486
MalI GATC 2 cut(s) 900, 1260
MboI GATC 2 cut(s) 898, 1258
MboII GAAGA 2 cut(s) 866, 908
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 6 cut(s) 10, 269, 280, 556, 613, 654
MlyI GAGTC 2 cut(s) 192, 694
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 8 cut(s) 75, 176, 240, 342, 542, 631, 1179, 1182
MroXI GAANNNNTTC 1 cut(s) 858
MseI TTAA 3 cut(s) 693, 1050, 1206
MslI CAYNNNNRTG 1 cut(s) 878
MspA1I CMGCKG 7 cut(s) 277, 327, 937, 973, 1009, 1084, 1234
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 2 cut(s) 10, 471
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 7 cut(s) 53, 233, 274, 324, 336, 501, 876
NdeII GATC 2 cut(s) 898, 1258
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 4 cut(s) 31, 140, 883, 989
NlaIV GGNNCC 4 cut(s) 454, 643, 711, 1330
NspI RCATGY 2 cut(s) 31, 883
PaeR7I CTCGAG 1 cut(s) 256
PctI GAATGC 2 cut(s) 10, 471
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 1 cut(s) 750
PkrI GCNGC 9 cut(s) 301, 326, 329, 597, 725, 955, 1202, 1276, 1279
PleI GAGTC 2 cut(s) 192, 693
PpsI GAGTC 2 cut(s) 192, 693
PsiI TTATAA 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 4 cut(s) 454, 643, 711, 1330
PspPI GGNCC 3 cut(s) 329, 642, 710
PspXI VCTCGAGB 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 14, 46
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 898
PvuII CAGCTG 5 cut(s) 937, 973, 1009, 1084, 1234
RsaI GTAC 3 cut(s) 23, 553, 1306
RsaNI GTAC 3 cut(s) 22, 552, 1305
RseI CAYNNNNRTG 1 cut(s) 878
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 693, 1050, 1206
SatI GCNGC 9 cut(s) 300, 325, 328, 596, 724, 954, 1201, 1275, 1278
Sau3AI GATC 2 cut(s) 898, 1258
Sau96I GGNCC 3 cut(s) 329, 642, 710
SchI GAGTC 2 cut(s) 192, 694
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 4 cut(s) 376, 879, 913, 1126
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 642
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 3 cut(s) 256, 438, 1151
SmoI CTYRAG 3 cut(s) 256, 438, 1151
Sse9I AATT 6 cut(s) 10, 269, 280, 556, 613, 654
SsiI CCGC 7 cut(s) 25, 47, 206, 275, 327, 510, 723
SspMI CTAG 6 cut(s) 57, 224, 311, 315, 876, 965
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 7 cut(s) 126, 388, 770, 1127, 1180, 1286, 1304
TaiI ACGT 2 cut(s) 403, 489
TaqI TCGA 2 cut(s) 257, 921
TasI AATT 6 cut(s) 10, 269, 280, 556, 613, 654
TauI GCSGC 2 cut(s) 330, 726
TfiI GAWTC 1 cut(s) 750
Tru1I TTAA 3 cut(s) 693, 1050, 1206
Tru9I TTAA 3 cut(s) 693, 1050, 1206
TscAI CASTG 2 cut(s) 244, 341
TseI GCWGC 7 cut(s) 299, 324, 595, 953, 1200, 1274, 1277
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 2 cut(s) 244, 341
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 654
XceI RCATGY 2 cut(s) 31, 883
XcmI CCANNNNNNNNNTGG 2 cut(s) 347, 416
XhoI CTCGAG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 6 cut(s) 57, 224, 311, 315, 876, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.