Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009691.1

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

24483 .. 25891

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009691.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggttaatggtcggtgcgctgcttgcaagtatctgagaaggagatgtccttcagattgcgtattcgctccctattttccctccaacaatcctcaaagatttgattctgttcatagaatctacgctcaagccgccgagactttatgttatgaggctgaaagtagaatacacgatcctgtgtatggctgcgctgcgattattttccaattacagcagcaaatatataacacagaatctgaattagccaaaacacgtgctgagattgcagttattagatctaatggaaaaggaaaagaaccagaggttcagccgagtactgatcaagttcatgatgggtttagggcctgccctcagagtaccatgatgagacacttacttccccctgaaatggcttcattagatgtagtgcagaatatggtaaacaatgaagctatggttgtctttcctcaaccggtggtcccttatagctatgcacaagctgctgcaggaacatcaaatggcctggctgcacgatctgaacctcctttttcaacctggactgctgtttctcgctggcgtggaagcggtgctgggaaagtctttgctggaagaggtgccggtagttccaccatgggaaaccgcactttgcgcatcaatgaagaaggtaacaatcaaccaagggatatgcgagctgtaaacagaaatggcagtgtgattggcctctttgatcgtgagattgatcagttccaaggtgcaaatgaggaaattaatcttgatttggacttggcggctaaccacaacagtatgctgcttgatcgaaacaatagtgaaggcactgaggaggaccagtttgttgaaaatgctttaaaggaccctagctatgatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

289

Amino Acids

32.0

Weight (kDa)

5.35

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	593
AciI	CCGC	4 cut(s)	132, 564, 619, 767
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	316, 358
AfiI	CCNNNNNNNGG	2 cut(s)	182, 388
AflIII	ACRYGT	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	531, 836
AjnI	CCWGG	2 cut(s)	501, 533
AluBI	AGCT	5 cut(s)	431, 468, 479, 671, 858
AluI	AGCT	5 cut(s)	431, 468, 479, 671, 858
Alw26I	GTCTC	2 cut(s)	131, 361
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	342, 499, 697
ApeKI	GCWGC	8 cut(s)	20, 186, 191, 214, 479, 482, 506, 787
AseI	ATTAAT	1 cut(s)	747
AsiGI	ACCGGT	1 cut(s)	451
AspLEI	GCGC	3 cut(s)	20, 191, 630
AspS9I	GGNCC	4 cut(s)	342, 457, 823, 850
AvaII	GGWCC	3 cut(s)	457, 823, 850
BanI	GGYRCC	1 cut(s)	593
BbrPI	CACGTG	1 cut(s)	254
BbvI	GCAGC	8 cut(s)	7, 173, 178, 226, 466, 469, 493, 774
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	503, 535
BclI	TGATCA	2 cut(s)	319, 718
BcoDI	GTCTC	2 cut(s)	131, 361
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	1 cut(s)	483
BglII	AGATCT	1 cut(s)	275
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	503, 535
Bme18I	GGWCC	3 cut(s)	457, 823, 850
BmgT120I	GGNCC	4 cut(s)	342, 457, 823, 850
BmiI	GGNNCC	3 cut(s)	459, 595, 852
BmrFI	CCNGG	2 cut(s)	503, 535
BmsI	GCATC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	609, 656, 727
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	812, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 388
Bse118I	RCCGGY	2 cut(s)	451, 596
Bse1I	ACTGG	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	503, 535
BseDI	CCNNGG	3 cut(s)	609, 656, 727
BseLI	CCNNNNNNNGG	2 cut(s)	182, 388
BseMII	CTCAG	4 cut(s)	26, 249, 365, 807
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	8 cut(s)	7, 173, 178, 226, 466, 469, 493, 774
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	2 cut(s)	428, 492
BshFI	GGCC	3 cut(s)	344, 501, 699
BshNI	GGYRCC	1 cut(s)	593
BshTI	ACCGGT	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	452, 597
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	182, 388
BsmAI	GTCTC	2 cut(s)	131, 361
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	344, 501, 699
Bsp143I	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	4 cut(s)	132, 564, 619, 767
BspANI	GGCC	3 cut(s)	344, 501, 699
BspCNI	CTCAG	4 cut(s)	27, 250, 364, 808
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	459, 595, 852
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	593
BsrFI	RCCGGY	2 cut(s)	451, 596
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	2 cut(s)	451, 596
BssECI	CCNNGG	3 cut(s)	609, 656, 727
BssMI	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
BssT1I	CCWWGG	3 cut(s)	609, 656, 727
Bst2UI	CCWGG	2 cut(s)	503, 535
Bst4CI	ACNGT	1 cut(s)	782
Bst6I	CTCTTC	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	25, 346, 554, 669
BstDEI	CTNAG	4 cut(s)	35, 258, 351, 816
BstDSI	CCRYGG	1 cut(s)	609
BstHHI	GCGC	3 cut(s)	20, 191, 630
BstKTI	GATC	8 cut(s)	175, 278, 322, 515, 709, 721, 796, 865
BstMAI	GTCTC	2 cut(s)	131, 361
BstMBI	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 131, 263, 479, 627
BstNI	CCWGG	2 cut(s)	503, 535
BstSCI	CCNGG	2 cut(s)	501, 533
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	8 cut(s)	7, 173, 178, 226, 466, 469, 493, 774
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	344, 501, 699
BtgI	CCRYGG	1 cut(s)	609
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	694, 813
Cac8I	GCNNGC	4 cut(s)	25, 346, 554, 669
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	3 cut(s)	20, 191, 630
Cfr10I	RCCGGY	2 cut(s)	451, 596
Cfr13I	GGNCC	4 cut(s)	342, 457, 823, 850
Csp6I	GTAC	2 cut(s)	315, 357
CspAI	ACCGGT	1 cut(s)	451
CviAII	CATG	3 cut(s)	329, 361, 610
CviQI	GTAC	2 cut(s)	315, 357
DdeI	CTNAG	4 cut(s)	35, 258, 351, 816
DpnI	GATC	8 cut(s)	174, 277, 321, 514, 708, 720, 795, 864
DpnII	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
DraI	TTTAAA	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco130I	CCWWGG	3 cut(s)	609, 656, 727
Eco47I	GGWCC	3 cut(s)	457, 823, 850
Eco57I	CTGAAG	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	254
EcoO109I	RGGNCCY	2 cut(s)	342, 850
EcoRII	CCWGG	2 cut(s)	501, 533
EcoT14I	CCWWGG	3 cut(s)	609, 656, 727
ErhI	CCWWGG	3 cut(s)	609, 656, 727
FaeI	CATG	3 cut(s)	332, 364, 613
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	328, 360, 609
FbaI	TGATCA	2 cut(s)	319, 718
FspBI	CTAG	1 cut(s)	855
FspI	TGCGCA	1 cut(s)	629
GlaI	GCGC	3 cut(s)	19, 190, 629
GsaI	CCCAGC	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	344, 501, 699
HapII	CCGG	2 cut(s)	452, 597
HhaI	GCGC	3 cut(s)	20, 191, 630
Hin1II	CATG	3 cut(s)	332, 364, 613
Hin6I	GCGC	3 cut(s)	18, 189, 628
HinP1I	GCGC	3 cut(s)	18, 189, 628
HinfI	GANTC	3 cut(s)	104, 117, 233
HpaII	CCGG	2 cut(s)	452, 597
Hpy166II	GTNNAC	2 cut(s)	421, 676
Hpy188I	TCNGA	5 cut(s)	36, 55, 238, 354, 517
Hpy188III	TCNNGA	3 cut(s)	329, 710, 752
Hpy8I	GTNNAC	2 cut(s)	421, 676
HpyAV	CCTTC	4 cut(s)	33, 60, 635, 803
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	7 cut(s)	27, 266, 409, 473, 485, 509, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 131, 263, 479, 627
HpyF3I	CTNAG	4 cut(s)	35, 258, 351, 816
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	332, 364, 613
HspAI	GCGC	3 cut(s)	18, 189, 628
Ksp22I	TGATCA	2 cut(s)	319, 718
Kzo9I	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	8 cut(s)	7, 173, 178, 226, 466, 469, 493, 774
LweI	GCATC	1 cut(s)	639
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	8 cut(s)	174, 277, 321, 514, 708, 720, 795, 864
MboI	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
MboII	GAAGA	2 cut(s)	600, 650
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	3 cut(s)	206, 239, 744
MmeI	TCCRAC	1 cut(s)	108
MseI	TTAA	3 cut(s)	6, 747, 845
MspI	CCGG	2 cut(s)	452, 597
MspR9I	CCNGG	2 cut(s)	503, 535
MvaI	CCWGG	2 cut(s)	503, 535
MwoI	GCNNNNNNNGC	5 cut(s)	24, 131, 263, 479, 627
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
NlaIII	CATG	3 cut(s)	332, 364, 613
NlaIV	GGNNCC	3 cut(s)	459, 595, 852
NmeAIII	GCCGAG	2 cut(s)	160, 336
NsbI	TGCGCA	1 cut(s)	629
PagI	TCATGA	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	104, 117, 233
PinAI	ACCGGT	1 cut(s)	451
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	850
PshBI	ATTAAT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	501, 533
PspCI	CACGTG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	501, 533
PspN4I	GGNNCC	3 cut(s)	459, 595, 852
PspPI	GGNCC	4 cut(s)	342, 457, 823, 850
PspPPI	RGGWCCY	1 cut(s)	850
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	2 cut(s)	316, 358
RsaNI	GTAC	2 cut(s)	315, 357
SaqAI	TTAA	3 cut(s)	6, 747, 845
Sau3AI	GATC	8 cut(s)	172, 275, 319, 512, 706, 718, 793, 862
Sau96I	GGNCC	4 cut(s)	342, 457, 823, 850
ScaI	AGTACT	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	503, 535
SfaNI	GCATC	1 cut(s)	639
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	3 cut(s)	457, 823, 850
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	206, 239, 744
SsiI	CCGC	4 cut(s)	132, 564, 619, 767
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	501, 533
StyI	CCWWGG	3 cut(s)	609, 656, 727
TaaI	ACNGT	1 cut(s)	782
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	796
TasI	AATT	3 cut(s)	206, 239, 744
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	2 cut(s)	134, 770
TfiI	GAWTC	3 cut(s)	104, 117, 233
Tru1I	TTAA	3 cut(s)	6, 747, 845
Tru9I	TTAA	3 cut(s)	6, 747, 845
TscAI	CASTG	2 cut(s)	694, 820
TseI	GCWGC	8 cut(s)	20, 186, 191, 214, 479, 482, 506, 787
TspDTI	ATGAA	5 cut(s)	101, 317, 384, 441, 651
TspRI	CASTG	2 cut(s)	694, 820
VpaK11BI	GGWCC	3 cut(s)	457, 823, 850
VspI	ATTAAT	1 cut(s)	747
XspI	CTAG	1 cut(s)	855
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.