Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

24796646 .. 24797996

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAAGTATACCCACTACAAAGCCAGCCAGGGACCAATAACCCATTCAGCTACAACCTTGCTACATCAGTAAATCAGAACGGTTCGAATTTAACTCCAATGTCTTCGAGCTTTCATAACTTGTGGTCTCATTTTAACGATGTAAATCAATGCGAAGTTGATTGGCAGTCGTTGTGTTCTGCTGGTTTTGAGACTGGTGCTAGTTCTGCATACCAGTTCCCTCCAAATTTGCCTGACAACAAAGGTGATCTTGATCCGCAACAAAATGTTCCAGTGTTGCCACCCCCAGAAGGGAATTTTAATGACCAATGTGGTCTGCTAAATATCAATGTTGGAGGAGGAAATGTTGAAAATTCCAATAGATATCTTCATGATATCTACATGAAGCCTGATTCTCTTTTCACGGATGAGCAGGACAACTGTCAACCTCCTTCTCAGCAACAAGATGGAGGTCACGATCAACTTCCTTATCAAGTTGAAGTGCAGGACCCTGCTGCGAACCAAGTACAGGTTGAAGAAACCTCAAATGTATATGGATATGCTAGTATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

185

Amino Acids

20.27

Weight (kDa)

4.05

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	4 cut(s)	88, 226, 295, 352
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	290, 291, 508
AgsI	TTSAA	3 cut(s)	350, 479, 515
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	2 cut(s)	51, 111
AluI	AGCT	2 cut(s)	51, 111
Alw26I	GTCTC	2 cut(s)	132, 185
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	4 cut(s)	88, 226, 295, 352
AspS9I	GGNCC	2 cut(s)	33, 487
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	2 cut(s)	33, 487
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	132, 185
BfaI	CTAG	2 cut(s)	201, 543
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	33, 487
BmgT120I	GGNCC	2 cut(s)	33, 487
BmiI	GGNNCC	2 cut(s)	34, 489
BmrFI	CCNGG	1 cut(s)	30
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	86
BsaBI	GATNNNNATC	2 cut(s)	144, 252
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 291, 508
Bse1I	ACTGG	3 cut(s)	199, 214, 272
Bse8I	GATNNNNATC	2 cut(s)	144, 252
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	2 cut(s)	144, 252
BseLI	CCNNNNNNNGG	3 cut(s)	290, 291, 508
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	3 cut(s)	199, 214, 272
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	3 cut(s)	290, 291, 508
BsmAI	GTCTC	2 cut(s)	132, 185
BsmFI	GGGAC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	247, 253, 457
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	34, 489
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	199, 214, 272
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	247, 253, 457
BssNAI	GTATAC	1 cut(s)	10
Bst1107I	GTATAC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	83, 422
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	250, 256, 460
BstMAI	GTCTC	2 cut(s)	132, 185
BstMBI	GATC	3 cut(s)	247, 253, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	30
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	96
BstZ17I	GTATAC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	33, 487
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	2 cut(s)	371, 382
CviJI	RGCY	5 cut(s)	24, 28, 51, 111, 388
CviKI_1	RGCY	5 cut(s)	24, 28, 51, 111, 388
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	3 cut(s)	249, 255, 459
DpnII	GATC	3 cut(s)	247, 253, 457
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	2 cut(s)	365, 376
Eco47I	GGWCC	2 cut(s)	33, 487
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	2 cut(s)	365, 376
FaeI	CATG	2 cut(s)	374, 385
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	370, 381
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	201, 543
GluI	GCNGC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	374, 385
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	1 cut(s)	392
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	10, 425
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	251, 371, 455
Hpy8I	GTNNAC	2 cut(s)	10, 425
HpyAV	CCTTC	2 cut(s)	284, 441
HpyCH4III	ACNGT	2 cut(s)	83, 422
HpyCH4V	TGCA	3 cut(s)	4, 209, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	374, 385
Kzo9I	GATC	3 cut(s)	247, 253, 457
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	201, 543
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	3 cut(s)	249, 255, 459
MboI	GATC	3 cut(s)	247, 253, 457
MboII	GAAGA	3 cut(s)	96, 359, 527
MluCI	AATT	4 cut(s)	88, 226, 295, 352
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	231, 329, 332, 438, 443, 532
MseI	TTAA	3 cut(s)	92, 135, 300
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	3 cut(s)	247, 253, 457
NlaIII	CATG	2 cut(s)	374, 385
NlaIV	GGNNCC	2 cut(s)	34, 489
NmuCI	GTSAC	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	86
PagI	TCATGA	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	487
PshAI	GACNNNNGTC	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	34, 489
PspPI	GGNCC	2 cut(s)	33, 487
PspPPI	RGGWCCY	1 cut(s)	487
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	92, 135, 300
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	247, 253, 457
Sau96I	GGNCC	2 cut(s)	33, 487
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	8 cut(s)	53, 60, 113, 247, 430, 454, 513, 524
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	2 cut(s)	33, 487
Sse9I	AATT	4 cut(s)	88, 226, 295, 352
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	201, 543
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	83, 422
TaqI	TCGA	2 cut(s)	86, 107
TasI	AATT	4 cut(s)	88, 226, 295, 352
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	92, 135, 300
Tru9I	TTAA	3 cut(s)	92, 135, 300
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	104, 359, 398
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	33, 487
XapI	RAATTY	4 cut(s)	88, 226, 295, 352
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	2 cut(s)	201, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.