Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

21410675 .. 21411570

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTATGGGTCGCTGTGCTGCTTGCAAGTATTTGAGAAAGGCATGTCCGGAAGATTGCATATTTGCTCCCTATTTTCCCTCCAACAATCCCCAAAGATTTGAGAATGTTCATAGAATCTATGGTGCCAAGAATGTTGCCACCATGCTCAAGGAATTGGAACCATTGCAACCGTATCTCCGAGCTCAAGCCGTTGAAACCTTATGTTATGAGGCTGAAAGTAGAATACAAAATCCTGTGTATGGCTGCGCTGCGATTATTTTCCACTTGCAACAACAAATACATAACATTGAATCTGAATTAGCCAAACTACGTGCTGAGATTGCAATTCTTAGCTCTAATGGACATGGACAAGCATCTGAGATTCAGTTGAGTACTGATCAAGTTCATGAGGACCAATCTGGTTCTTCCTCTAAAGCTCCTAATTGGTTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

146

Amino Acids

16.3

Weight (kDa)

6.19

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 105	2.3e-37	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	49
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	197, 293
AluBI	AGCT	3 cut(s)	185, 336, 419
AluI	AGCT	3 cut(s)	185, 336, 419
Alw21I	GWGCWC	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	49
ApeKI	GCWGC	3 cut(s)	20, 246, 251
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	7, 233, 238
BceAI	ACGGC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	379
BisI	GCNGC	3 cut(s)	21, 247, 252
BlsI	GCNGC	3 cut(s)	22, 248, 253
BmcAI	AGTACT	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	127, 162
BmsI	GCATC	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	134, 171
BsaAI	YACGTR	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	309, 351
BseXI	GCAGC	3 cut(s)	7, 233, 238
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	310, 352
BspEI	TCCGGA	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	127, 162
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	164
BssMI	GATC	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	318, 332, 360
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	7, 233, 238
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	4 cut(s)	45, 145, 347, 389
CviJI	RGCY	7 cut(s)	185, 191, 215, 246, 305, 336, 419
CviKI_1	RGCY	7 cut(s)	185, 191, 215, 246, 305, 336, 419
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	3 cut(s)	318, 332, 360
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	4 cut(s)	48, 148, 350, 392
FatI	CATG	4 cut(s)	44, 144, 346, 388
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	21, 247, 252
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	21, 247, 252
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	21, 247, 252
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	48, 148, 350, 392
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	117, 293, 364
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	4 cut(s)	182, 298, 361, 437
Hpy188III	TCNNGA	2 cut(s)	50, 389
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	27, 60, 169, 271, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	3 cut(s)	318, 332, 360
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	4 cut(s)	48, 148, 350, 392
HspAI	GCGC	1 cut(s)	249
Kpn2I	TCCGGA	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	73, 424
LpnPI	CCDG	3 cut(s)	63, 249, 387
Lsp1109I	GCAGC	3 cut(s)	7, 233, 238
LweI	GCATC	1 cut(s)	365
MaeII	ACGT	1 cut(s)	313
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	65, 399
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	155, 299, 327, 424
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	91, 205, 385, 421
MroI	TCCGGA	1 cut(s)	49
MspI	CCGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	48, 148, 350, 392
NlaIV	GGNNCC	2 cut(s)	127, 162
NspI	RCATGY	1 cut(s)	48
PagI	TCATGA	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	117, 293, 364
PkrI	GCNGC	3 cut(s)	22, 248, 253
Ppu21I	YACGTR	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	127, 162
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	187
SatI	GCNGC	3 cut(s)	21, 247, 252
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	5 cut(s)	187, 203, 316, 338, 421
SfaNI	GCATC	1 cut(s)	365
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	149, 186
SmoI	CTYRAG	2 cut(s)	149, 186
Sse9I	AATT	4 cut(s)	155, 299, 327, 424
SstI	GAGCTC	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	316
TasI	AATT	4 cut(s)	155, 299, 327, 424
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	117, 293, 364
TseI	GCWGC	3 cut(s)	20, 246, 251
TspDTI	ATGAA	2 cut(s)	101, 377
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.