Rh1CG387600
MYB Family

response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
65722674 .. 65724361
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG387600.1

Sequence Viewer

Length: 303 bp
ATGGATGCAGAGGGAGTTGTTGATCGAGGGAGGCAGTACTCTGCCAATATCAATATCTTGCTTGTCGACGATGATATCACCACTCTAAACATAGTTTCTGCAATGCTCAAAACATGGAGCTATGAAGTTGTGACTGTTCCGAACCCTATAGATGCTATTTCTATCCTTCGAAAGGGAAAATGCTCCTTTGATCTAGTTGTTACAGATCTCCACATGCCTCAGATGAATGGTTTGGAATTGCAGAAGCTAGTGCATGATGAGTTTGAGCTACCCGTCATTAGTGAGTTCATGTCTTTAGTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

4.4

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 19 - 93 1.7e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 120, 247, 268
AluI AGCT 3 cut(s) 120, 247, 268
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 169
BfaI CTAG 2 cut(s) 194, 248
BfmI CTRYAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 38
BmsI GCATC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 108
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 22, 190, 205
BspCNI CTCAG 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 108
BssMI GATC 3 cut(s) 22, 190, 205
Bst4CI ACNGT 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 25, 193, 208
BstMBI GATC 3 cut(s) 22, 190, 205
BstNSI RCATGY 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BtsCI GGATG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 37
CviAII CATG 4 cut(s) 114, 214, 254, 289
CviJI RGCY 3 cut(s) 120, 247, 268
CviKI_1 RGCY 3 cut(s) 120, 247, 268
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 24, 192, 207
DpnII GATC 3 cut(s) 22, 190, 205
Eco32I GATATC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 76
FaeI CATG 4 cut(s) 117, 217, 257, 292
FaiI YATR 7 cut(s) 92, 115, 123, 149, 215, 255, 290
FatI CATG 4 cut(s) 113, 213, 253, 288
FblI GTMKAC 1 cut(s) 66
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 194, 248
Hin1II CATG 4 cut(s) 117, 217, 257, 292
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 141, 222
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 8, 101, 241, 253
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 4 cut(s) 117, 217, 257, 292
Kzo9I GATC 3 cut(s) 22, 190, 205
LmnI GCTCC 2 cut(s) 117, 188
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 194, 248
MaeIII GTNAC 2 cut(s) 130, 199
MalI GATC 3 cut(s) 24, 192, 207
MboI GATC 3 cut(s) 22, 190, 205
MflI RGATCY 1 cut(s) 205
MluCI AATT 1 cut(s) 236
MnlI CCTC 4 cut(s) 4, 20, 24, 228
MseI TTAA 1 cut(s) 301
NdeII GATC 3 cut(s) 22, 190, 205
NlaIII CATG 4 cut(s) 117, 217, 257, 292
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 169
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 301
Sau3AI GATC 3 cut(s) 22, 190, 205
ScaI AGTACT 1 cut(s) 38
SetI ASST 3 cut(s) 122, 249, 270
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 169
SgeI CNNG 9 cut(s) 38, 70, 74, 126, 206, 226, 260, 266, 284
Sse9I AATT 1 cut(s) 236
SspMI CTAG 2 cut(s) 194, 248
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 25, 66, 169
TasI AATT 1 cut(s) 236
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 138, 239, 277
XagI CCTNNNNNAGG 1 cut(s) 170
XceI RCATGY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 194, 248
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.