Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

29455468 .. 29456116

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1196600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATTTCTGGTCGTTGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTCCTTCCGATTGCATTTTCTCTCCATATTTTCCTCCAAATAATCCTCAAAGATTTGCTTCTGTTCATAGGATCTATGGTGCCAGCAACGTTGCCAAAATGCTCCAGCAACTACCAGGCCATCTGAGAGCTGAAGCAGCAGATACTTTGTGCTATGAAGCCGAATGTAGAATACAAGACTCAGTGTACGGTTGTGTTAAGACTATTTCCCAATTGCATCAAGAAATTCACAACGCAGAATGTCAATTAGCGAAAACACGAGCTGAGATTGCCTTCATCAACTCTGGCGGCGGAGGAGGAGGGCAAGAACATCAAGTGCATCAAACGCCAGAAGTTCAGTCCGACTTAAGTTTCTTTCCGGACCAAACCGAAGTTGAGGCAACCCTATTTGGCTCTTCCTCCAAAGCTCCTTGGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

156

Amino Acids

17.17

Weight (kDa)

6.57

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 102	3.6e-37	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	2 cut(s)	333, 336
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	23, 176, 308, 452
AluI	AGCT	4 cut(s)	23, 176, 308, 452
AlwI	GGATC	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	20, 182
ApoI	RAATTY	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	32, 194
BccI	CCATC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	391
BisI	GCNGC	3 cut(s)	21, 183, 334
BlsI	GCNGC	3 cut(s)	22, 184, 335
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	271, 373
BpmI	CTGGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	455
BsaWI	WCCGGW	1 cut(s)	403
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	455
BseMII	CTCAG	4 cut(s)	26, 161, 240, 300
BseRI	GAGGAG	2 cut(s)	354, 357
BseXI	GCAGC	2 cut(s)	32, 194
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	404
BsnI	GGCC	1 cut(s)	165
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	333, 336
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	4 cut(s)	27, 162, 239, 301
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	25, 130
BstDEI	CTNAG	4 cut(s)	35, 170, 226, 309
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 314, 370
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	32, 194
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	25, 130
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	7 cut(s)	23, 165, 176, 206, 308, 438, 452
CviKI_1	RGCY	7 cut(s)	23, 165, 176, 206, 308, 438, 452
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	4 cut(s)	35, 170, 226, 309
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaiI	YATR	4 cut(s)	73, 114, 123, 201
FalI	AAGNNNNNCTT	4 cut(s)	34, 66, 88, 120
Fnu4HI	GCNGC	3 cut(s)	21, 183, 334
Fsp4HI	GCNGC	3 cut(s)	21, 183, 334
GluI	GCNGC	3 cut(s)	21, 183, 334
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	404
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	36, 55, 171, 388
Hpy188III	TCNNGA	2 cut(s)	266, 404
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	60, 328
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	20, 27, 60, 262, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 314, 370
HpyF3I	CTNAG	4 cut(s)	35, 170, 226, 309
HpySE526I	ACGT	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	117
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	2 cut(s)	153, 457
LpnPI	CCDG	7 cut(s)	142, 147, 164, 174, 315, 387, 417
Lsp1109I	GCAGC	2 cut(s)	32, 194
LweI	GCATC	2 cut(s)	271, 373
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	51, 54, 432
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	3 cut(s)	257, 270, 290
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	7 cut(s)	90, 102, 332, 335, 338, 415, 454
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	2 cut(s)	243, 392
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	182, 314, 370
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	22, 184, 335
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	243, 392
SatI	GCNGC	3 cut(s)	21, 183, 334
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	25, 138, 178, 310, 454
SfaNI	GCATC	2 cut(s)	271, 373
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	257, 270, 290
SsiI	CCGC	2 cut(s)	333, 336
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	138
TasI	AATT	3 cut(s)	257, 270, 290
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	243, 392
Tru9I	TTAA	2 cut(s)	243, 392
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	20, 182
TspDTI	ATGAA	3 cut(s)	101, 216, 310
TspRI	CASTG	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.