Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

50654843 .. 50655544

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0397500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCATGTTCTCATCCTCATGGTTGAAATTACCGAGCAAGGTGAACCAACCCGCGCCAGCACCGAGTTCGTGCAAAAGTATTTCTTGCTCATCCTTCAGAGACATCCAAAACATCTGCAAATCTCAACCCGAAACCGAGGTCCTGAGCCCGAGGAGTGCCTCCATTTTGCAGCGTATCAAGATGTCCACCACGGTCCTCCTGCGCCTCTGGGCTCGCGGCGTAGAGGGCTGCAAAGTGCGCAACGGAGACCAACGTGTAGTGATTTACTACACGAGTCTCCGTGTGGTGCGGAGGACCTTTGAGGATTGCAGGGTGGTCAGATCGATCCTCGGAGGGTTTCGGGTCCCCATTGACGAGCGAGATCTGTCAATGGACTCCAAGTTTGTGCAGGAGCTGGAGGAGGTCACTGGGAGCAAGGACTTGAACTTGCCCATGGTTTTCGTCAGCGGAGACTACATTGGTGGCGCCGAGGAGGTGAGGCAGCTCCATGAAAGCGGAGAGCTAAAGACAATGCTCCAAGGGCTCCCGGTGGTGGAGTCCAAAACTTGTGATGTGTGCGGAGGGCTGAGATTTATTCTCTGCCAGACTTGCAACGGAAGCCACAAACTCTACAGACAGAAAGATGGGTTTTGCCCTTGTATGGACTGTAACATGAATGGCATGATTACGTGCCCTTCATGTTCAACTGCGGGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

233

Amino Acids

25.87

Weight (kDa)

8.52

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	88 - 154	7.5e-09	Glutaredoxin
GRXCR1-2_C	PF23733	184 - 229	2.8e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	2 cut(s)	56, 219
AciI	CCGC	7 cut(s)	54, 219, 292, 450, 498, 561, 692
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	535, 643
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	28, 427, 687
AluBI	AGCT	3 cut(s)	397, 487, 505
AluI	AGCT	3 cut(s)	397, 487, 505
Alw26I	GTCTC	4 cut(s)	96, 243, 284, 447
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	172, 231, 484
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 368, 400
AspLEI	GCGC	4 cut(s)	58, 207, 243, 470
AspS9I	GGNCC	4 cut(s)	142, 196, 297, 346
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	55, 490
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	4 cut(s)	142, 196, 297, 346
BaeGI	GKGCMC	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	3 cut(s)	152, 217, 528
BauI	CACGAG	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	184, 218, 496
BccI	CCATC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	4 cut(s)	96, 243, 284, 447
BfmI	CTRYAG	1 cut(s)	613
BfoI	RGCGCY	1 cut(s)	471
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	4 cut(s)	173, 220, 232, 485
BlsI	GCNGC	4 cut(s)	174, 221, 233, 486
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	4 cut(s)	142, 196, 297, 346
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	4 cut(s)	142, 196, 297, 346
BmiI	GGNNCC	4 cut(s)	347, 348, 469, 527
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	530
Bsa29I	ATCGAT	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	7 cut(s)	138, 152, 192, 331, 435, 471, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 643
Bse1I	ACTGG	1 cut(s)	415
BseCI	ATCGAT	1 cut(s)	326
BseDI	CCNNGG	7 cut(s)	138, 152, 192, 331, 435, 471, 520
BseGI	GGATG	3 cut(s)	14, 92, 105
BseLI	CCNNNNNNNGG	2 cut(s)	535, 643
BseMII	CTCAG	2 cut(s)	137, 560
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	3 cut(s)	169, 416, 488
BseSI	GKGCMC	1 cut(s)	677
BseXI	GCAGC	3 cut(s)	184, 218, 496
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	56, 219
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	535, 643
BsmAI	GTCTC	4 cut(s)	96, 243, 284, 447
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	4 cut(s)	152, 217, 528, 677
Bsp143I	GATC	3 cut(s)	323, 327, 364
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	7 cut(s)	54, 219, 292, 450, 498, 561, 692
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	138, 561
BspDI	ATCGAT	1 cut(s)	326
BspFNI	CGCG	2 cut(s)	56, 219
BspLI	GGNNCC	4 cut(s)	347, 348, 469, 527
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	7 cut(s)	138, 152, 192, 331, 435, 471, 520
BssMI	GATC	3 cut(s)	323, 327, 364
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	435, 520
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	3 cut(s)	196, 650, 699
BstACI	GRCGYC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	60, 217
BstDEI	CTNAG	2 cut(s)	146, 569
BstDSI	CCRYGG	2 cut(s)	192, 435
BstF5I	GGATG	3 cut(s)	14, 92, 105
BstFNI	CGCG	2 cut(s)	56, 219
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	4 cut(s)	58, 207, 243, 470
BstKTI	GATC	3 cut(s)	326, 330, 367
BstMAI	GTCTC	4 cut(s)	96, 243, 284, 447
BstMBI	GATC	3 cut(s)	323, 327, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 240, 523, 591, 600
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	2 cut(s)	56, 219
BstV1I	GCAGC	3 cut(s)	184, 218, 496
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	326
BtgI	CCRYGG	2 cut(s)	192, 435
BtsCI	GGATG	3 cut(s)	14, 92, 105
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	60, 217
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	4 cut(s)	58, 207, 243, 470
Cfr13I	GGNCC	4 cut(s)	142, 196, 297, 346
ClaI	ATCGAT	1 cut(s)	326
CviAII	CATG	7 cut(s)	7, 21, 436, 491, 655, 664, 681
DdeI	CTNAG	2 cut(s)	146, 569
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	3 cut(s)	325, 329, 366
DpnII	GATC	3 cut(s)	323, 327, 364
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	435, 520
Eco24I	GRGCYC	3 cut(s)	152, 217, 528
Eco31I	GGTCTC	1 cut(s)	243
Eco47I	GGWCC	4 cut(s)	142, 196, 297, 346
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	3 cut(s)	142, 297, 346
EcoT14I	CCWWGG	2 cut(s)	435, 520
EcoT38I	GRGCYC	3 cut(s)	152, 217, 528
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
ErhI	CCWWGG	2 cut(s)	435, 520
FaeI	CATG	7 cut(s)	10, 24, 439, 494, 658, 667, 684
FaiI	YATR	8 cut(s)	8, 22, 437, 492, 644, 656, 665, 682
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	7 cut(s)	6, 20, 435, 490, 654, 663, 680
FauI	CCCGC	2 cut(s)	61, 685
Fnu4HI	GCNGC	4 cut(s)	173, 220, 232, 485
FokI	GGATG	2 cut(s)	79, 92
FriOI	GRGCYC	3 cut(s)	152, 217, 528
Fsp4HI	GCNGC	4 cut(s)	173, 220, 232, 485
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	4 cut(s)	57, 206, 242, 469
GluI	GCNGC	4 cut(s)	173, 220, 232, 485
GsuI	CTGGAG	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	4 cut(s)	58, 207, 243, 470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	10, 24, 439, 494, 658, 667, 684
Hin6I	GCGC	4 cut(s)	56, 205, 241, 468
HinP1I	GCGC	4 cut(s)	56, 205, 241, 468
HinfI	GANTC	3 cut(s)	277, 377, 539
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	55, 490
Hpy166II	GTNNAC	2 cut(s)	46, 189
Hpy188I	TCNGA	3 cut(s)	101, 323, 335
Hpy188III	TCNNGA	2 cut(s)	145, 181
Hpy8I	GTNNAC	2 cut(s)	46, 189
HpyAV	CCTTC	2 cut(s)	106, 687
HpyCH4III	ACNGT	3 cut(s)	196, 650, 699
HpyCH4IV	ACGT	2 cut(s)	256, 671
HpyCH4V	TGCA	7 cut(s)	75, 120, 172, 234, 312, 391, 594
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 240, 523, 591, 600
HpyF3I	CTNAG	2 cut(s)	146, 569
HpySE526I	ACGT	2 cut(s)	256, 671
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	7 cut(s)	10, 24, 439, 494, 658, 667, 684
HspAI	GCGC	4 cut(s)	56, 205, 241, 468
KasI	GGCGCC	1 cut(s)	467
KflI	GGGWCCC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	323, 327, 364
LmnI	GCTCC	5 cut(s)	394, 414, 492, 522, 531
Lsp1109I	GCAGC	3 cut(s)	184, 218, 496
MaeII	ACGT	2 cut(s)	256, 671
MaeIII	GTNAC	2 cut(s)	406, 650
MalI	GATC	3 cut(s)	325, 329, 366
MboI	GATC	3 cut(s)	323, 327, 364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	4 cut(s)	152, 217, 528, 677
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	468
MlyI	GAGTC	3 cut(s)	286, 371, 548
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	19
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	530
MvnI	CGCG	2 cut(s)	56, 219
MwoI	GCNNNNNNNGC	5 cut(s)	228, 240, 523, 591, 600
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	323, 327, 364
NlaIII	CATG	7 cut(s)	10, 24, 439, 494, 658, 667, 684
NlaIV	GGNNCC	4 cut(s)	347, 348, 469, 527
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	174, 221, 233, 486
PleI	GAGTC	3 cut(s)	285, 371, 547
PluTI	GGCGCC	1 cut(s)	471
PpsI	GAGTC	3 cut(s)	285, 371, 547
Ppu21I	YACGTR	1 cut(s)	672
PpuMI	RGGWCCY	3 cut(s)	142, 297, 346
Psp5II	RGGWCCY	3 cut(s)	142, 297, 346
PspN4I	GGNNCC	4 cut(s)	347, 348, 469, 527
PspPI	GGNCC	4 cut(s)	142, 196, 297, 346
PspPPI	RGGWCCY	3 cut(s)	142, 297, 346
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	4 cut(s)	173, 220, 232, 485
Sau3AI	GATC	3 cut(s)	323, 327, 364
Sau96I	GGNCC	4 cut(s)	142, 196, 297, 346
SchI	GAGTC	3 cut(s)	286, 371, 548
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	4 cut(s)	152, 217, 528, 677
SfcI	CTRYAG	1 cut(s)	613
SfoI	GGCGCC	1 cut(s)	469
SinI	GGWCC	4 cut(s)	142, 196, 297, 346
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	7 cut(s)	54, 219, 292, 450, 498, 561, 692
SspDI	GGCGCC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	2 cut(s)	435, 520
TaaI	ACNGT	3 cut(s)	196, 650, 699
TaiI	ACGT	2 cut(s)	259, 674
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	172, 231, 484
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	3 cut(s)	507, 669, 671
TspGWI	ACGGA	3 cut(s)	261, 272, 612
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	4 cut(s)	142, 196, 297, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.