Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

33261992 .. 33262621

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1263500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATTTCTGATCGTTGTGCAGCTTGCAAGTATCTGAGAAGAAGATGTCCTTCCGATTGCATCTTCTCTTCGTATTTTCCTCCAAATAATCCTCAAAGATTTGCTTCTGTTCATAGGATCTATGGTGCCAGCAATGTTTCCAAAATGCTCCAGCAACTACCAAACCATCTGAGAGCTGAAGCAGCAGATGCTTTGTGCTATGAAGCTGAATGTAGAATACAAGATTCAGTTTGCGGTTGTGTCAAGACTATTTTTCAACTGCATCAAGAAATTTACAACGCAGAATGCCAGTTAGCTAAAACACGAGCTGAGATCGCCCTCACCAATTCTCGCGGAGGAGGAGGACAAAAAAATCAAGTGAATCAAATGCAAGAAGTTCAGTCCAACTTATATTTCTTTCCGGACCAAACCCATGTTGAGGCAACCCAATTTGGTTCTTCCTCCAAAGCTCCTTGGTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

155

Amino Acids

17.37

Weight (kDa)

8.39

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 102	1.9e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	2 cut(s)	234, 333
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	6 cut(s)	23, 176, 206, 296, 308, 449
AluI	AGCT	6 cut(s)	23, 176, 206, 296, 308, 449
AlwI	GGATC	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	20, 182
ApoI	RAATTY	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	32, 194
BccI	CCATC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	21, 183
BlsI	GCNGC	2 cut(s)	22, 184
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	3 cut(s)	69, 178, 271
BpmI	CTGGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	452
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	26, 161, 300
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	351, 354
BseXI	GCAGC	2 cut(s)	32, 194
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	10, 117, 312
BspACI	CCGC	2 cut(s)	234, 333
BspCNI	CTCAG	3 cut(s)	27, 162, 301
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	3 cut(s)	10, 117, 312
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	25, 130
BstDEI	CTNAG	3 cut(s)	35, 170, 309
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	13, 120, 315
BstMBI	GATC	3 cut(s)	10, 117, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 188, 314
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	32, 194
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	25, 130
Cfr13I	GGNCC	1 cut(s)	403
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	6 cut(s)	23, 176, 206, 296, 308, 449
CviKI_1	RGCY	6 cut(s)	23, 176, 206, 296, 308, 449
DdeI	CTNAG	3 cut(s)	35, 170, 309
DpnI	GATC	3 cut(s)	12, 119, 314
DpnII	GATC	3 cut(s)	10, 117, 312
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	1 cut(s)	416
FaiI	YATR	5 cut(s)	114, 123, 201, 391, 414
FalI	AAGNNNNNCTT	4 cut(s)	34, 66, 88, 120
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	21, 183
Fsp4HI	GCNGC	2 cut(s)	21, 183
GluI	GCNGC	2 cut(s)	21, 183
GsuI	CTGGAG	1 cut(s)	134
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	1 cut(s)	416
HinfI	GANTC	2 cut(s)	224, 361
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	10, 36, 55, 171
Hpy188III	TCNNGA	3 cut(s)	244, 266, 401
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	20, 27, 60, 262, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 188, 314
HpyF3I	CTNAG	3 cut(s)	35, 170, 309
Hsp92II	CATG	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	10, 117, 312
LmnI	GCTCC	2 cut(s)	153, 454
LpnPI	CCDG	4 cut(s)	142, 164, 302, 414
Lsp1109I	GCAGC	2 cut(s)	32, 194
LweI	GCATC	3 cut(s)	69, 178, 271
MalI	GATC	3 cut(s)	12, 119, 314
MboI	GATC	3 cut(s)	10, 117, 312
MboII	GAAGA	5 cut(s)	51, 54, 55, 60, 429
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	3 cut(s)	270, 325, 428
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	90, 102, 329, 329, 332, 335, 412, 451
MroI	TCCGGA	1 cut(s)	400
MspI	CCGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	290
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	182, 188, 314
NdeII	GATC	3 cut(s)	10, 117, 312
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	224, 361
PkrI	GCNGC	2 cut(s)	22, 184
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	117
SatI	GCNGC	2 cut(s)	21, 183
Sau3AI	GATC	3 cut(s)	10, 117, 312
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	6 cut(s)	25, 178, 208, 298, 310, 451
SfaNI	GCATC	3 cut(s)	69, 178, 271
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	3 cut(s)	270, 325, 428
SsiI	CCGC	2 cut(s)	234, 333
StyI	CCWWGG	1 cut(s)	452
TasI	AATT	3 cut(s)	270, 325, 428
TfiI	GAWTC	2 cut(s)	224, 361
TseI	GCWGC	2 cut(s)	20, 182
TspDTI	ATGAA	2 cut(s)	101, 216
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.