RchiOBHm_Chr1g0376691

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001432
Physical Location & Seq
Forward (+)
63894818 .. 63898077
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60031

Sequence Viewer

Length: 1188 bp
ATGGTTAATGGTCGGTGCGCTGCTTGCAAGTATCTGAGAAGGAGATGTCCTTCAGATTGCGTATTCGCTCCCTATTTTCCCTCCAACAATCCTCAAAGATTTGATTCTGTTCATAGAATCTACGGTGCCAGCAATGTTGCCAAAATGCTTGAGCCACTGACACCATATTTTCGAGCTCAAGCCGCCGAGACTTTATGTTATGAGGCTGAAAGTAGAATACACGATCCTGTGTATGGCTGCGCTGCGATTATTTTCCAATTACAGCAGCAAATATATAACACAGAATCTGAATTAGCCAAAACACGTGCTGAGATTGCAGTTATTAGATCTAATGGAAAAGGAAAAGAACCAGAGGTTCAGCCGAGTACTGATCAAGTTCATGATGGGTTTAGGGCCTGCCCTCAGAGTACCATGATGAGACACTTACTTCCCCCTGAAATGGCTTCATTAGATGTAGTGCAGAATATGGTAAACAATGAAGCTATGGTTGTCTTTCCTCAACCGGTGGTCCCTTATAGCTATGCACAAGCTGCTGCAGGAACATCAAATGGCCTGGCTGCACGATCTGAACCTCCTTTTTCAACCTGGACTGCTGTTTCTCGCTGGCGTGGTAGCGGTGCTGGGAAAGTCTTTGCTGGAAGAGGTGCTGGTAGTTCCACCATGGGAAACCGCACTTTGCGCATCAATGAAGAAGGTAACAATCAACCAAGGGATATGCGAGCTGTAAACAGAAATGGCAGTGTGATTGGCCTCTTTGATCATTCTGAGATCCACTCTAGATTTAGAATAATGGTTGGTCGTTGTGCTGCTTGCAAGTATTTGAGAAAAGGATGTCCGGAAGATTGCATTTTCGCTCCCTATTTTCCCCCCAACAATCCTCAAAGATTTGAACATGTTCATAGAATCTATGGTGCCAAGAATGTTGCCACCTTGCTTAAGGAATTGGAATCACTGCAACCGTATTTTCGAGCTCAAGCCATTGAAACTTTATGTTATGAGGCTGAAAGTAGAATACAAAATCCTGTGTATGGCTGTGCTGCGCTTATTTTCCATTTACAACAGCAAATACATAACATAGAATCTGAATTAGCCAAAATACGTGCTGAGATTGCAGTTCTTAGCTCTAATGGACAAGGACAAGGAGCATCTGAGATGCAGCCGAGTATTGATCAAGTTCATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

395

Amino Acids

43.95

Weight (kDa)

8.19

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 5 - 102 1.8e-37 Lateral organ boundaries (LOB) domain
LOB PF03195 267 - 367 4.2e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 680
AccB1I GGYRCC 2 cut(s) 125, 911
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 3 cut(s) 183, 615, 670
AclWI GGATC 2 cut(s) 218, 763
AcuI CTGAAG 1 cut(s) 36
AcvI CACGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 367, 409
AfiI CCNNNNNNNGG 3 cut(s) 233, 439, 1028
AflII CTTAAG 1 cut(s) 935
AflIII ACRYGT 2 cut(s) 302, 892
AgeI ACCGGT 1 cut(s) 502
AgsI TTSAA 3 cut(s) 582, 890, 983
AjnI CCWGG 2 cut(s) 552, 584
AluBI AGCT 7 cut(s) 176, 482, 519, 530, 722, 971, 1122
AluI AGCT 7 cut(s) 176, 482, 519, 530, 722, 971, 1122
Alw21I GWGCWC 2 cut(s) 178, 973
Alw26I GTCTC 2 cut(s) 182, 412
AlwI GGATC 2 cut(s) 218, 763
AlwNI CAGNNNCTG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 835
AoxI GGCC 3 cut(s) 393, 550, 748
AsiGI ACCGGT 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 4 cut(s) 20, 242, 681, 1042
AspS9I GGNCC 2 cut(s) 393, 508
AvaII GGWCC 1 cut(s) 508
BanI GGYRCC 2 cut(s) 125, 911
BanII GRGCYC 2 cut(s) 178, 973
BbrPI CACGTG 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 178, 973
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 554, 586
BclI TGATCA 3 cut(s) 370, 757, 1168
BcoDI GTCTC 2 cut(s) 182, 412
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 534
BfrI CTTAAG 1 cut(s) 935
BglII AGATCT 1 cut(s) 326
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 554, 586
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 2 cut(s) 393, 508
BmiI GGNNCC 3 cut(s) 127, 510, 913
BmrFI CCNGG 2 cut(s) 554, 586
BmsI GCATC 3 cut(s) 690, 1143, 1154
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpuEI CTTGAG 3 cut(s) 162, 170, 957
BsaAI YACGTR 2 cut(s) 305, 1100
BsaJI CCNNGG 2 cut(s) 660, 707
BsaWI WCCGGW 2 cut(s) 502, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 439, 1028
Bse118I RCCGGY 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 835
BseBI CCWGG 2 cut(s) 554, 586
BseDI CCNNGG 2 cut(s) 660, 707
BseGI GGATG 1 cut(s) 836
BseLI CCNNNNNNNGG 3 cut(s) 233, 439, 1028
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 6 cut(s) 26, 300, 416, 756, 1095, 1140
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 2 cut(s) 479, 543
BshFI GGCC 3 cut(s) 395, 552, 750
BshNI GGYRCC 2 cut(s) 125, 911
BshTI ACCGGT 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 178, 973
BsiSI CCGG 2 cut(s) 503, 836
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 233, 439, 1028
BsmAI GTCTC 2 cut(s) 182, 412
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 3 cut(s) 395, 552, 750
Bsp1286I GDGCHC 2 cut(s) 178, 973
Bsp13I TCCGGA 1 cut(s) 835
Bsp143I GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 3 cut(s) 183, 615, 670
BspANI GGCC 3 cut(s) 395, 552, 750
BspCNI CTCAG 6 cut(s) 27, 301, 415, 757, 1096, 1141
BspEI TCCGGA 1 cut(s) 835
BspHI TCATGA 2 cut(s) 379, 1177
BspLI GGNNCC 3 cut(s) 127, 510, 913
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 2 cut(s) 218, 763
BspT107I GGYRCC 2 cut(s) 125, 911
BspTI CTTAAG 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 660, 707
BssMI GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
BssT1I CCWWGG 2 cut(s) 660, 707
Bst2UI CCWGG 2 cut(s) 554, 586
Bst4CI ACNGT 2 cut(s) 125, 960
Bst6I CTCTTC 1 cut(s) 634
BstAFI CTTAAG 1 cut(s) 935
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBAI YACGTR 2 cut(s) 305, 1100
BstC8I GCNNGC 6 cut(s) 25, 130, 397, 605, 720, 811
BstDEI CTNAG 7 cut(s) 35, 309, 402, 765, 1104, 1118, 1149
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 1 cut(s) 836
BstHHI GCGC 4 cut(s) 20, 242, 681, 1042
BstKTI GATC 7 cut(s) 226, 329, 373, 566, 760, 771, 1171
BstMAI GTCTC 2 cut(s) 182, 412
BstMBI GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
BstMWI GCNNNNNNNGC 6 cut(s) 24, 182, 314, 530, 678, 1109
BstNI CCWGG 2 cut(s) 554, 586
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 2 cut(s) 552, 584
BstSFI CTRYAG 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 326, 768
BstYI RGATCY 2 cut(s) 326, 768
BsuRI GGCC 3 cut(s) 395, 552, 750
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 836
BtsI GCAGTG 2 cut(s) 745, 950
BtsIMutI CAGTG 3 cut(s) 155, 745, 950
Cac8I GCNNGC 6 cut(s) 25, 130, 397, 605, 720, 811
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 2 cut(s) 379, 1177
CfoI GCGC 4 cut(s) 20, 242, 681, 1042
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 393, 508
Csp6I GTAC 2 cut(s) 366, 408
CspAI ACCGGT 1 cut(s) 502
CviAII CATG 5 cut(s) 380, 412, 661, 893, 1178
CviQI GTAC 2 cut(s) 366, 408
DdeI CTNAG 7 cut(s) 35, 309, 402, 765, 1104, 1118, 1149
DpnI GATC 7 cut(s) 225, 328, 372, 565, 759, 770, 1170
DpnII GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 2 cut(s) 176, 971
Eco130I CCWWGG 2 cut(s) 660, 707
Eco24I GRGCYC 2 cut(s) 178, 973
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 2 cut(s) 176, 971
Eco57I CTGAAG 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 305
EcoICRI GAGCTC 2 cut(s) 176, 971
EcoO109I RGGNCCY 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 552, 584
EcoT14I CCWWGG 2 cut(s) 660, 707
EcoT38I GRGCYC 2 cut(s) 178, 973
ErhI CCWWGG 2 cut(s) 660, 707
FaeI CATG 5 cut(s) 383, 415, 664, 896, 1181
FaqI GGGAC 1 cut(s) 494
FatI CATG 5 cut(s) 379, 411, 660, 892, 1177
FbaI TGATCA 3 cut(s) 370, 757, 1168
FokI GGATG 1 cut(s) 843
FriOI GRGCYC 2 cut(s) 178, 973
FspBI CTAG 1 cut(s) 777
FspI TGCGCA 1 cut(s) 680
GlaI GCGC 4 cut(s) 19, 241, 680, 1041
GsaI CCCAGC 1 cut(s) 624
HaeIII GGCC 3 cut(s) 395, 552, 750
HapII CCGG 2 cut(s) 503, 836
HhaI GCGC 4 cut(s) 20, 242, 681, 1042
Hin1II CATG 5 cut(s) 383, 415, 664, 896, 1181
Hin6I GCGC 4 cut(s) 18, 240, 679, 1040
HinP1I GCGC 4 cut(s) 18, 240, 679, 1040
HinfI GANTC 6 cut(s) 104, 117, 284, 903, 947, 1079
HpaII CCGG 2 cut(s) 503, 836
Hpy166II GTNNAC 2 cut(s) 472, 727
Hpy188I TCNGA 8 cut(s) 36, 55, 289, 405, 568, 766, 1084, 1150
Hpy188III TCNNGA 4 cut(s) 380, 777, 836, 1178
Hpy8I GTNNAC 2 cut(s) 472, 727
HpyAV CCTTC 3 cut(s) 33, 60, 686
HpyCH4III ACNGT 2 cut(s) 125, 960
HpyCH4IV ACGT 2 cut(s) 304, 1099
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 182, 314, 530, 678, 1109
HpyF3I CTNAG 7 cut(s) 35, 309, 402, 765, 1104, 1118, 1149
HpySE526I ACGT 2 cut(s) 304, 1099
Hsp92II CATG 5 cut(s) 383, 415, 664, 896, 1181
HspAI GCGC 4 cut(s) 18, 240, 679, 1040
Kpn2I TCCGGA 1 cut(s) 835
Ksp22I TGATCA 3 cut(s) 370, 757, 1168
Kzo9I GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
LmnI GCTCC 3 cut(s) 73, 859, 1142
LweI GCATC 3 cut(s) 690, 1143, 1154
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 304, 1099
MaeIII GTNAC 1 cut(s) 695
MalI GATC 7 cut(s) 225, 328, 372, 565, 759, 770, 1170
MboI GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
MboII GAAGA 3 cut(s) 651, 701, 851
MflI RGATCY 2 cut(s) 326, 768
MhlI GDGCHC 2 cut(s) 178, 973
MluCI AATT 4 cut(s) 257, 290, 941, 1085
MmeI TCCRAC 1 cut(s) 108
MroI TCCGGA 1 cut(s) 835
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 2 cut(s) 6, 936
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 2 cut(s) 503, 836
MspR9I CCNGG 2 cut(s) 554, 586
MvaI CCWGG 2 cut(s) 554, 586
MwoI GCNNNNNNNGC 6 cut(s) 24, 182, 314, 530, 678, 1109
NcoI CCATGG 1 cut(s) 660
NdeII GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
NlaIII CATG 5 cut(s) 383, 415, 664, 896, 1181
NlaIV GGNNCC 3 cut(s) 127, 510, 913
NmeAIII GCCGAG 3 cut(s) 211, 387, 1185
NsbI TGCGCA 1 cut(s) 680
NspI RCATGY 1 cut(s) 896
PagI TCATGA 2 cut(s) 379, 1177
PciI ACATGT 1 cut(s) 892
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 6 cut(s) 104, 117, 284, 903, 947, 1079
PinAI ACCGGT 1 cut(s) 502
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
Ppu21I YACGTR 2 cut(s) 305, 1100
PscI ACATGT 1 cut(s) 892
Psp124BI GAGCTC 2 cut(s) 178, 973
Psp6I CCWGG 2 cut(s) 552, 584
PspCI CACGTG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 552, 584
PspN4I GGNNCC 3 cut(s) 127, 510, 913
PspPI GGNCC 2 cut(s) 393, 508
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 2 cut(s) 326, 768
RsaI GTAC 2 cut(s) 367, 409
RsaNI GTAC 2 cut(s) 366, 408
SacI GAGCTC 2 cut(s) 178, 973
SaqAI TTAA 2 cut(s) 6, 936
Sau3AI GATC 7 cut(s) 223, 326, 370, 563, 757, 768, 1168
Sau96I GGNCC 2 cut(s) 393, 508
ScaI AGTACT 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 554, 586
SduI GDGCHC 2 cut(s) 178, 973
SfaNI GCATC 3 cut(s) 690, 1143, 1154
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 508
SmlI CTYRAG 4 cut(s) 149, 177, 935, 972
SmoI CTYRAG 4 cut(s) 149, 177, 935, 972
Sse9I AATT 4 cut(s) 257, 290, 941, 1085
SsiI CCGC 3 cut(s) 183, 615, 670
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 2 cut(s) 178, 973
StyD4I CCNGG 2 cut(s) 552, 584
StyI CCWWGG 2 cut(s) 660, 707
TaaI ACNGT 2 cut(s) 125, 960
TaiI ACGT 2 cut(s) 307, 1102
TaqI TCGA 2 cut(s) 172, 967
TasI AATT 4 cut(s) 257, 290, 941, 1085
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 6 cut(s) 104, 117, 284, 903, 947, 1079
Tru1I TTAA 2 cut(s) 6, 936
Tru9I TTAA 2 cut(s) 6, 936
TscAI CASTG 3 cut(s) 162, 745, 957
TspDTI ATGAA 7 cut(s) 101, 368, 435, 492, 702, 887, 1166
TspRI CASTG 3 cut(s) 162, 745, 957
Vha464I CTTAAG 1 cut(s) 935
VpaK11BI GGWCC 1 cut(s) 508
XbaI TCTAGA 1 cut(s) 776
XceI RCATGY 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 1 cut(s) 777
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.