RLG00000026579

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001432
Physical Location & Seq
Reverse (-)
4010469 .. 4014536
4068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026579

Sequence Viewer

Length: 453 bp
ATGGTTGGTCGTTGTGCTGCTTGCAAGTATTTGAGAAAAGGATGTCCGGAAGATTGCATTTTCGCTCCCTATTTTCCCTCCAACAATCCTCAAAGATTTGAACATGTTCATAGAATCTATGGTGCCAAGAATGTTGCCACCTTGCTTAAGGAATTGGAATCACTGCAACCGTATTTTCGAGCTCAAGCCATTGAAACTTTATGTTATGAGGCTGAAAGTAGAATACAAAATCCTGTGTATGGCTGCGCTGCGATTATTTTCCACTTACAACAGCAAATACATAACATAGAATCTGAATTAGCCAAAATTCGTGCTGAGATTGCAGTTCTTAGCTTTAATGGACAAGGACAAGGAGCATCTGAGATGCAGCCGAGTACTGATCAAGTTCATGAGGATCGATTTGGGTTTGAGCTCCGTCACTTTCAAATCGCCGGCTCTGATTTGAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

151

Amino Acids

17.06

Weight (kDa)

6.58

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 104 2.5e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 46
AclWI GGATC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 306
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 3 cut(s) 101, 194, 425
AluBI AGCT 3 cut(s) 182, 333, 412
AluI AGCT 3 cut(s) 182, 333, 412
Alw21I GWGCWC 2 cut(s) 184, 414
AlwI GGATC 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 46
ApeKI GCWGC 4 cut(s) 17, 243, 248, 367
ApoI RAATTY 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 184, 414
Bbv12I GWGCWC 2 cut(s) 184, 414
BbvI GCAGC 4 cut(s) 4, 230, 235, 379
BclI TGATCA 1 cut(s) 379
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 4 cut(s) 18, 244, 249, 368
BlsI GCNGC 4 cut(s) 19, 245, 250, 369
BmcAI AGTACT 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 2 cut(s) 354, 365
BpuEI CTTGAG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 46
BseCI ATCGAT 1 cut(s) 397
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 306, 351
BseXI GCAGC 4 cut(s) 4, 230, 235, 379
BshNI GGYRCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 397
BsiHKAI GWGCWC 2 cut(s) 184, 414
BsiSI CCGG 2 cut(s) 47, 432
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 184, 414
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 379, 394
BspCNI CTCAG 2 cut(s) 307, 352
BspDI ATCGAT 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 431
BssMI GATC 2 cut(s) 379, 394
Bst4CI ACNGT 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 22, 433
BstDEI CTNAG 3 cut(s) 315, 329, 360
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 382, 397
BstMBI GATC 2 cut(s) 379, 394
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 4, 230, 235, 379
Bsu15I ATCGAT 1 cut(s) 397
BsuTUI ATCGAT 1 cut(s) 397
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 22, 433
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 104, 389
CviJI RGCY 9 cut(s) 182, 188, 212, 243, 302, 333, 370, 412, 435
CviKI_1 RGCY 9 cut(s) 182, 188, 212, 243, 302, 333, 370, 412, 435
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 315, 329, 360
DpnI GATC 2 cut(s) 381, 396
DpnII GATC 2 cut(s) 379, 394
Ecl136II GAGCTC 2 cut(s) 182, 412
Eco24I GRGCYC 2 cut(s) 184, 414
Eco53kI GAGCTC 2 cut(s) 182, 412
EcoICRI GAGCTC 2 cut(s) 182, 412
EcoT38I GRGCYC 2 cut(s) 184, 414
FaeI CATG 2 cut(s) 107, 392
FaiI YATR 9 cut(s) 105, 111, 120, 202, 207, 240, 282, 287, 390
FatI CATG 2 cut(s) 103, 388
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 18, 244, 249, 368
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 2 cut(s) 184, 414
Fsp4HI GCNGC 4 cut(s) 18, 244, 249, 368
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 18, 244, 249, 368
HapII CCGG 2 cut(s) 47, 432
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 107, 392
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 3 cut(s) 114, 158, 290
HpaII CCGG 2 cut(s) 47, 432
Hpy188I TCNGA 3 cut(s) 295, 361, 439
Hpy188III TCNNGA 2 cut(s) 47, 389
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 24, 57, 166, 323, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 315, 329, 360
Hsp92II CATG 2 cut(s) 107, 392
HspAI GCGC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 46
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 379, 394
LmnI GCTCC 3 cut(s) 70, 353, 417
LpnPI CCDG 3 cut(s) 60, 246, 445
Lsp1109I GCAGC 4 cut(s) 4, 230, 235, 379
LweI GCATC 2 cut(s) 354, 365
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 381, 396
MboI GATC 2 cut(s) 379, 394
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 184, 414
MluCI AATT 3 cut(s) 152, 296, 306
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 88, 99, 202, 385, 438
MroI TCCGGA 1 cut(s) 46
MroNI GCCGGC 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 147, 336
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 47, 432
MwoI GCNNNNNNNGC 1 cut(s) 320
NaeI GCCGGC 1 cut(s) 433
NdeII GATC 2 cut(s) 379, 394
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 107, 392
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 107
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 114, 158, 290
PkrI GCNGC 4 cut(s) 19, 245, 250, 369
PscI ACATGT 1 cut(s) 103
Psp124BI GAGCTC 2 cut(s) 184, 414
PspN4I GGNNCC 1 cut(s) 124
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacI GAGCTC 2 cut(s) 184, 414
SaqAI TTAA 2 cut(s) 147, 336
SatI GCNGC 4 cut(s) 18, 244, 249, 368
Sau3AI GATC 2 cut(s) 379, 394
ScaI AGTACT 1 cut(s) 376
SduI GDGCHC 2 cut(s) 184, 414
SetI ASST 4 cut(s) 143, 184, 335, 414
SfaNI GCATC 2 cut(s) 354, 365
SmlI CTYRAG 2 cut(s) 146, 183
SmoI CTYRAG 2 cut(s) 146, 183
Sse9I AATT 3 cut(s) 152, 296, 306
SstI GAGCTC 2 cut(s) 184, 414
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 178, 397
TasI AATT 3 cut(s) 152, 296, 306
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 3 cut(s) 114, 158, 290
Tru1I TTAA 2 cut(s) 147, 336
Tru9I TTAA 2 cut(s) 147, 336
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 4 cut(s) 17, 243, 248, 367
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 98, 377
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 168
Vha464I CTTAAG 1 cut(s) 146
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.