Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

64265549 .. 64266201

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTAATGGTCGGTGCGCTGCTTGCAAGTATCTGAGAAGGAGATGTCCTTCAGATTGCGTATTCGCTCCCTATTTTCCCTCCAACAATCCTCAAAGATTTGATTCTGTTCATAGAATCTACGGTGCCAGCAATGTTGCCAAAATGCTTGAGCCACTGACACCATATTTTCGAGCTCAAGCCGCCGAGACTTTATGTTATGAGGCTGAAAGTAGAATACACGATCCAGTGTATGGCTGCGCTGCGATTATTTTCCAATTACAGCAGCAAATATATAACACAGAATCTGAATTAGCCAAAACACGTGCTGAGATTGCAGTTATTAGATCTAATGGAAAAGGAAAAGAACCAGAGGTTCAGCCGAGTACTGATCAAGTTCATGATGGTAAGCTGTTCCTGTACGTTGAATTATACAAAAACTGGCTGATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

144

Amino Acids

16.47

Weight (kDa)

8.52

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 102	1.7e-38	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	367, 401
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	2 cut(s)	176, 391
AluI	AGCT	2 cut(s)	176, 391
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	20, 237, 242, 265
AspLEI	GCGC	2 cut(s)	20, 242
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	7, 224, 229, 277
BccI	CCATC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	5 cut(s)	21, 183, 238, 243, 266
BlsI	GCNGC	5 cut(s)	22, 184, 239, 244, 267
BmcAI	AGTACT	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	162, 170
BsaAI	YACGTR	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	227, 425
Bse3DI	GCAATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	26, 300
BseNI	ACTGG	2 cut(s)	227, 425
BseXI	GCAGC	4 cut(s)	7, 224, 229, 277
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	223, 326, 370
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	27, 301
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	227, 425
BssMI	GATC	3 cut(s)	223, 326, 370
Bst4CI	ACNGT	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	25, 130
BstDEI	CTNAG	2 cut(s)	35, 309
BstHHI	GCGC	2 cut(s)	20, 242
BstKTI	GATC	3 cut(s)	226, 329, 373
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	223, 326, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 182, 314
BstV1I	GCAGC	4 cut(s)	7, 224, 229, 277
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	155, 234
Cac8I	GCNNGC	2 cut(s)	25, 130
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	20, 242
Csp6I	GTAC	2 cut(s)	366, 400
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	9 cut(s)	154, 176, 182, 206, 237, 296, 361, 391, 424
CviKI_1	RGCY	9 cut(s)	154, 176, 182, 206, 237, 296, 361, 391, 424
CviQI	GTAC	2 cut(s)	366, 400
DdeI	CTNAG	2 cut(s)	35, 309
DpnI	GATC	3 cut(s)	225, 328, 372
DpnII	GATC	3 cut(s)	223, 326, 370
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	1 cut(s)	383
FaiI	YATR	9 cut(s)	114, 166, 196, 201, 234, 274, 276, 381, 412
FatI	CATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	21, 183, 238, 243, 266
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	5 cut(s)	21, 183, 238, 243, 266
GlaI	GCGC	2 cut(s)	19, 241
GluI	GCNGC	5 cut(s)	21, 183, 238, 243, 266
HhaI	GCGC	2 cut(s)	20, 242
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	2 cut(s)	18, 240
HinP1I	GCGC	2 cut(s)	18, 240
HinfI	GANTC	3 cut(s)	104, 117, 284
Hpy188I	TCNGA	3 cut(s)	36, 55, 289
Hpy188III	TCNNGA	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	33, 60
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	304, 402
HpyCH4V	TGCA	2 cut(s)	27, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 182, 314
HpyF3I	CTNAG	2 cut(s)	35, 309
HpySE526I	ACGT	2 cut(s)	304, 402
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	2 cut(s)	18, 240
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	223, 326, 370
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	142, 240, 363, 406, 410
Lsp1109I	GCAGC	4 cut(s)	7, 224, 229, 277
MaeII	ACGT	2 cut(s)	304, 402
MalI	GATC	3 cut(s)	225, 328, 372
MboI	GATC	3 cut(s)	223, 326, 370
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	257, 290, 407
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	91, 102, 196, 346
MseI	TTAA	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	24, 182, 314
NdeII	GATC	3 cut(s)	223, 326, 370
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	2 cut(s)	211, 387
PagI	TCATGA	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	104, 117, 284
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	22, 184, 239, 244, 267
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	367, 401
RsaNI	GTAC	2 cut(s)	366, 400
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	5 cut(s)	21, 183, 238, 243, 266
Sau3AI	GATC	3 cut(s)	223, 326, 370
ScaI	AGTACT	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	5 cut(s)	178, 307, 357, 393, 405
SmlI	CTYRAG	2 cut(s)	149, 177
SmoI	CTYRAG	2 cut(s)	149, 177
Sse9I	AATT	3 cut(s)	257, 290, 407
SsiI	CCGC	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	307, 405
TaqI	TCGA	1 cut(s)	172
TasI	AATT	3 cut(s)	257, 290, 407
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	104, 117, 284
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	162, 234
TseI	GCWGC	4 cut(s)	20, 237, 242, 265
TspDTI	ATGAA	2 cut(s)	101, 368
TspRI	CASTG	2 cut(s)	162, 234
Van91I	CCANNNNNTGG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.