FvH4_7g01090

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001432
Physical Location & Seq
Reverse (-)
1501337 .. 1502392
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01090.t1

Sequence Viewer

Length: 441 bp
ATGATTTCTGGTCGTTGTGCTGCTTGCCGGTATTTGAGAAGGAGATGCCCTTCAGATTGTATATTCGCTCCATATTTTCCACCAAATAATCCTCAAAGATTTGCTTCTGTTCATAGAATCTATGGTGCCAGCAATGTTGCAAGAATGCTCCAGCAACTCCCACCTGATCTTCGAGCTCAAGCTGCAGACACTCTGTATTATGAGGCTGAATGCAGAGTAGAAAATCCTGTATATGGCTGTGTTGGGGTTCTTTCCCGATTACATGAACAAATAGAAGAAGCCGAAAGTGAATTAGCTAAGACACGAGCTAACATTGTCCTTAACTCTGATGTTGGACAACAATCTCAAGTTCAGCAAATTGATGATGAAGTTGAAGACAACTCAAGTCTTTTACAAGCGCAAACCATTGTTGGGCAGACTCAGTTTGGTTCTTCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

147

Amino Acids

16.33

Weight (kDa)

5.14

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 5 - 102 2.3e-39 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 233, 411
AgsI TTSAA 1 cut(s) 374
AluBI AGCT 4 cut(s) 176, 182, 296, 308
AluI AGCT 4 cut(s) 176, 182, 296, 308
Alw21I GWGCWC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 20, 182
AspLEI GCGC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 7, 169
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 21, 183
BlsI GCNGC 2 cut(s) 22, 184
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 162, 330, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 411
Bse118I RCCGGY 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 233, 411
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 7, 169
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 233, 411
BsmI GAATGC 2 cut(s) 150, 215
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 25, 130
BstDEI CTNAG 2 cut(s) 297, 420
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 7, 169
BstV2I GAAGAC 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 25, 130
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 27
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 176, 182, 206, 237, 281, 296, 308
CviKI_1 RGCY 7 cut(s) 176, 182, 206, 237, 281, 296, 308
DdeI CTNAG 2 cut(s) 297, 420
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 266
FaiI YATR 8 cut(s) 62, 73, 114, 123, 201, 232, 234, 264
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 21, 183
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 21, 183
GlaI GCGC 1 cut(s) 399
GluI GCNGC 2 cut(s) 21, 183
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 400
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 2 cut(s) 117, 418
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 55, 328
Hpy188III TCNNGA 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 33, 60
HpyCH4V TGCA 3 cut(s) 140, 185, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 297, 420
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 73, 153
LpnPI CCDG 5 cut(s) 41, 142, 164, 177, 240
Lsp1109I GCAGC 2 cut(s) 7, 169
LweI GCATC 1 cut(s) 35
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 161, 287, 386, 423
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 290, 357
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 2 cut(s) 102, 196
MseI TTAA 1 cut(s) 321
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 2 cut(s) 150, 215
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 127
PctI GAATGC 2 cut(s) 150, 215
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 22, 184
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 21, 183
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 412
SduI GDGCHC 1 cut(s) 178
SetI ASST 5 cut(s) 166, 178, 184, 298, 310
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 183
SmlI CTYRAG 3 cut(s) 177, 345, 382
SmoI CTYRAG 3 cut(s) 177, 345, 382
Sse9I AATT 2 cut(s) 290, 357
SstI GAGCTC 1 cut(s) 178
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 290, 357
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseI GCWGC 2 cut(s) 20, 182
TspDTI ATGAA 3 cut(s) 101, 279, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.