RLG00000026580

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001432
Physical Location & Seq
Reverse (-)
4015834 .. 4017244
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026580

Sequence Viewer

Length: 921 bp
ATGGTTAATGGTCGGTGCGCTGCTTGCAAGTATCTGAGAAGGAGATGTCCTTCAGATTGCGTATTCGCTCCCTATTTTCCCTCCAACAATCCTCAAAGATTTGATTCTGTTCATAGAATCTATGGTGCCAGCAATGTTGCCAAAATGCTCGAGCCACTGACACCATATTTTCGAGCTCAAGCAGCCGAGACTTTATGTTATGAGGCTGAAAGTAGAATACACGATCCTGTGTATGGCTGCGCTGCGATAATTTTCCAATTACAGCAGCAAATATATAACACAGAATCTGAATTAGCCAAAACACGTGCTGAGATTGCAGTTATTAGATCTAATGGAAAAGGAAAAGAACCAGAGGTTCAGCCAAATATTGATCAAGTTCATGATGGGTTTAGGGCCCGCCCTCAGAGTACCATGATGAGACACTCACTTCCCCCTGAAATGGCTTCATTAGATGTAGCGCAGAATATGGTAAACAATGAAGCTATGGTTGTCTTTCCTCAACCGGTGGTCCCTTATAGCTATGCACAAGCTGCTGCAGGAACATCAAATGGCCAGGCTGCACAATCTGAACCTCCTTTTTCAACCTGGACTGCTGTTTCTCGCTGGCGTGGTAGCGATGCTGGGAAAGTCTCTGCTGGAAGAGGTACTGGTAGTTCCACCATGGGGAACCGCACTTTGCGTATCAATGAAGAAGGTAACAATCAACCAAGGGATATGCGAGCTATAAACAGAAACGGCAGTGTGATTGGCCTCTTTGATCGTGAGATTGATCAGTTCCAAGGTGCAAATGAGGAAATTAATCTTGATTTGGACTTGGCGGCTAACCACAACAGTATGCTGCTTGATCGAAACAATAGTGAAGGCACTGAGGAGGACCGGTTTGTTGAAAATGCTTTAAAGGACCCTAGCTATGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

307

Amino Acids

33.97

Weight (kDa)

5.5

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 5 - 102 1.1e-37 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 3 cut(s) 397, 670, 818
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 36
AcvI CACGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 409, 646
AfiI CCNNNNNNNGG 3 cut(s) 233, 439, 663
AflIII ACRYGT 1 cut(s) 302
AgeI ACCGGT 2 cut(s) 502, 876
AgsI TTSAA 2 cut(s) 582, 887
AjnI CCWGG 2 cut(s) 552, 584
AluBI AGCT 6 cut(s) 176, 482, 519, 530, 722, 909
AluI AGCT 6 cut(s) 176, 482, 519, 530, 722, 909
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 3 cut(s) 182, 412, 634
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 3 cut(s) 393, 550, 748
ApaI GGGCCC 1 cut(s) 397
ApeKI GCWGC 9 cut(s) 20, 182, 237, 242, 265, 530, 533, 557, 838
AseI ATTAAT 1 cut(s) 798
AsiGI ACCGGT 2 cut(s) 502, 876
AspLEI GCGC 3 cut(s) 20, 242, 460
AspS9I GGNCC 5 cut(s) 393, 394, 508, 874, 901
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 508, 874, 901
BaeGI GKGCMC 1 cut(s) 397
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 178, 397
BbrPI CACGTG 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 9 cut(s) 7, 194, 224, 229, 277, 517, 520, 544, 825
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 751
BciT130I CCWGG 2 cut(s) 554, 586
BclI TGATCA 2 cut(s) 370, 769
BcoDI GTCTC 3 cut(s) 182, 412, 634
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 534
BglII AGATCT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 554, 586
Bme18I GGWCC 3 cut(s) 508, 874, 901
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 5 cut(s) 393, 394, 508, 874, 901
BmiI GGNNCC 5 cut(s) 127, 395, 510, 668, 903
BmrFI CCNGG 2 cut(s) 554, 586
BmsI GCATC 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 660, 707, 778
BsaWI WCCGGW 2 cut(s) 502, 876
BsaXI ACNNNNNCTCC 2 cut(s) 863, 893
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 439, 663
Bse118I RCCGGY 2 cut(s) 502, 876
Bse1I ACTGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 2 cut(s) 554, 586
BseDI CCNNGG 3 cut(s) 660, 707, 778
BseLI CCNNNNNNNGG 3 cut(s) 233, 439, 663
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 4 cut(s) 26, 300, 416, 858
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 9 cut(s) 7, 194, 224, 229, 277, 517, 520, 544, 825
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 3 cut(s) 395, 552, 750
BshNI GGYRCC 1 cut(s) 125
BshTI ACCGGT 2 cut(s) 502, 876
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 503, 877
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 233, 439, 663
BsmAI GTCTC 3 cut(s) 182, 412, 634
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 3 cut(s) 395, 552, 750
BsoBI CYCGRG 1 cut(s) 149
Bsp120I GGGCCC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 178, 397
Bsp143I GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 3 cut(s) 397, 670, 818
BspANI GGCC 3 cut(s) 395, 552, 750
BspCNI CTCAG 4 cut(s) 27, 301, 415, 859
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 5 cut(s) 127, 395, 510, 668, 903
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 502, 876
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 2 cut(s) 502, 876
BssECI CCNNGG 3 cut(s) 660, 707, 778
BssMI GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
BssT1I CCWWGG 3 cut(s) 660, 707, 778
Bst2UI CCWGG 2 cut(s) 554, 586
Bst4CI ACNGT 1 cut(s) 833
Bst6I CTCTTC 1 cut(s) 634
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 5 cut(s) 25, 130, 397, 605, 720
BstDEI CTNAG 4 cut(s) 35, 309, 402, 867
BstDSI CCRYGG 1 cut(s) 660
BstHHI GCGC 3 cut(s) 20, 242, 460
BstKTI GATC 7 cut(s) 226, 329, 373, 760, 772, 847, 916
BstMAI GTCTC 3 cut(s) 182, 412, 634
BstMBI GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
BstMWI GCNNNNNNNGC 4 cut(s) 24, 182, 314, 530
BstNI CCWGG 2 cut(s) 554, 586
BstSCI CCNGG 2 cut(s) 552, 584
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 9 cut(s) 7, 194, 224, 229, 277, 517, 520, 544, 825
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 3 cut(s) 395, 552, 750
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 630
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 155, 745, 864
Cac8I GCNNGC 5 cut(s) 25, 130, 397, 605, 720
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 379
CfoI GCGC 3 cut(s) 20, 242, 460
Cfr10I RCCGGY 2 cut(s) 502, 876
Cfr13I GGNCC 5 cut(s) 393, 394, 508, 874, 901
Csp6I GTAC 2 cut(s) 408, 645
CspAI ACCGGT 2 cut(s) 502, 876
CviAII CATG 3 cut(s) 380, 412, 661
CviQI GTAC 2 cut(s) 408, 645
DdeI CTNAG 4 cut(s) 35, 309, 402, 867
DpnI GATC 7 cut(s) 225, 328, 372, 759, 771, 846, 915
DpnII GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
DraI TTTAAA 1 cut(s) 897
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 3 cut(s) 660, 707, 778
Eco24I GRGCYC 2 cut(s) 178, 397
Eco47I GGWCC 3 cut(s) 508, 874, 901
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 176
EcoO109I RGGNCCY 2 cut(s) 393, 901
EcoRII CCWGG 2 cut(s) 552, 584
EcoT14I CCWWGG 3 cut(s) 660, 707, 778
EcoT38I GRGCYC 2 cut(s) 178, 397
ErhI CCWWGG 3 cut(s) 660, 707, 778
FaeI CATG 3 cut(s) 383, 415, 664
FaqI GGGAC 1 cut(s) 494
FatI CATG 3 cut(s) 379, 411, 660
FauI CCCGC 1 cut(s) 404
FbaI TGATCA 2 cut(s) 370, 769
FriOI GRGCYC 2 cut(s) 178, 397
FspBI CTAG 1 cut(s) 906
GlaI GCGC 3 cut(s) 19, 241, 459
GsaI CCCAGC 1 cut(s) 624
HaeIII GGCC 3 cut(s) 395, 552, 750
HapII CCGG 2 cut(s) 503, 877
HhaI GCGC 3 cut(s) 20, 242, 460
Hin1II CATG 3 cut(s) 383, 415, 664
Hin6I GCGC 3 cut(s) 18, 240, 458
HinP1I GCGC 3 cut(s) 18, 240, 458
HinfI GANTC 3 cut(s) 104, 117, 284
HpaII CCGG 2 cut(s) 503, 877
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 5 cut(s) 36, 55, 289, 405, 568
Hpy188III TCNNGA 3 cut(s) 380, 761, 803
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 4 cut(s) 33, 60, 686, 854
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 27, 317, 524, 536, 560, 785
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 182, 314, 530
HpyF3I CTNAG 4 cut(s) 35, 309, 402, 867
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 3 cut(s) 383, 415, 664
HspAI GCGC 3 cut(s) 18, 240, 458
Ksp22I TGATCA 2 cut(s) 370, 769
Kzo9I GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 9 cut(s) 7, 194, 224, 229, 277, 517, 520, 544, 825
LweI GCATC 1 cut(s) 607
MaeI CTAG 1 cut(s) 906
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 695
MalI GATC 7 cut(s) 225, 328, 372, 759, 771, 846, 915
MboI GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
MboII GAAGA 2 cut(s) 651, 701
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 178, 397
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 4 cut(s) 249, 257, 290, 795
MluNI TGGCCA 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 3 cut(s) 6, 798, 896
Msp20I TGGCCA 1 cut(s) 552
MspI CCGG 2 cut(s) 503, 877
MspR9I CCNGG 2 cut(s) 554, 586
MvaI CCWGG 2 cut(s) 554, 586
MwoI GCNNNNNNNGC 4 cut(s) 24, 182, 314, 530
NcoI CCATGG 1 cut(s) 660
NdeII GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
NlaIII CATG 3 cut(s) 383, 415, 664
NlaIV GGNNCC 5 cut(s) 127, 395, 510, 668, 903
NmeAIII GCCGAG 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 379
PfeI GAWTC 3 cut(s) 104, 117, 284
PinAI ACCGGT 2 cut(s) 502, 876
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 901
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 901
Psp6I CCWGG 2 cut(s) 552, 584
PspCI CACGTG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 552, 584
PspN4I GGNNCC 5 cut(s) 127, 395, 510, 668, 903
PspOMI GGGCCC 1 cut(s) 393
PspPI GGNCC 5 cut(s) 393, 394, 508, 874, 901
PspPPI RGGWCCY 1 cut(s) 901
PspXI VCTCGAGB 1 cut(s) 149
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 409, 646
RsaNI GTAC 2 cut(s) 408, 645
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 3 cut(s) 6, 798, 896
Sau3AI GATC 7 cut(s) 223, 326, 370, 757, 769, 844, 913
Sau96I GGNCC 5 cut(s) 393, 394, 508, 874, 901
ScrFI CCNGG 2 cut(s) 554, 586
SduI GDGCHC 2 cut(s) 178, 397
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 3 cut(s) 508, 874, 901
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 149, 177
SmoI CTYRAG 2 cut(s) 149, 177
Sse9I AATT 4 cut(s) 249, 257, 290, 795
SsiI CCGC 3 cut(s) 397, 670, 818
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 906
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 552, 584
StyI CCWWGG 3 cut(s) 660, 707, 778
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 150, 172, 847
TasI AATT 4 cut(s) 249, 257, 290, 795
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 3 cut(s) 104, 117, 284
Tru1I TTAA 3 cut(s) 6, 798, 896
Tru9I TTAA 3 cut(s) 6, 798, 896
TscAI CASTG 3 cut(s) 162, 745, 871
TseI GCWGC 9 cut(s) 20, 182, 237, 242, 265, 530, 533, 557, 838
TspDTI ATGAA 5 cut(s) 101, 368, 435, 492, 702
TspRI CASTG 3 cut(s) 162, 745, 871
VpaK11BI GGWCC 3 cut(s) 508, 874, 901
VspI ATTAAT 1 cut(s) 798
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.