Prupe.2G290000_v2.0.a1

LOB domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
28417169 .. 28417788
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G290000.1

Sequence Viewer

Length: 405 bp
ATGATCTCTGGTCGTTGTGCAGCTTGCAAGTATCTGAGAAGGAGATGTCCTTCAGATTGCATATTCTTTCCCTATTTTCCTCCCAATAATCCTGAAAGATTTGCCTCTGTTCATAGAATCTATGGTGCCAGCAATGTTGCCAAAATGCTCCAGCAACTACCACACCATTTGAGAGGTGAAGCAGCCGATACTTTGTGTTATGAAGCTGAATGTAGAACACAAGATTGTGTGTATGGTTGTGTTAAGACTATTTCACAATTACATCAAGAAATAAACAAGGCAGAATGCCAACTAGCTAAAACACGAGCTGAGATTGCCTTCATTAGCTCTAGTGGTGGACAAGGAAGGACTACAACAACCTCAACCTCAACCTCATTACCAATTACAAGTTCAACCCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.84

Weight (kDa)

8.79

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 36
AgsI TTSAA 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 5 cut(s) 23, 206, 296, 308, 327
AluI AGCT 5 cut(s) 23, 206, 296, 308, 327
ApeKI GCWGC 2 cut(s) 20, 182
AsuHPI GGTGA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 32, 194
BfaI CTAG 2 cut(s) 293, 330
BisI GCNGC 2 cut(s) 21, 183
BlsI GCNGC 2 cut(s) 22, 184
BmiI GGNNCC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 26, 300
BseXI GCAGC 2 cut(s) 32, 194
BsgI GTGCAG 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 2 cut(s) 27, 301
BspLI GGNNCC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 139
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 25, 130
BstDEI CTNAG 2 cut(s) 35, 309
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 32, 194
Cac8I GCNNGC 2 cut(s) 25, 130
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviJI RGCY 6 cut(s) 23, 185, 206, 296, 308, 327
CviKI_1 RGCY 6 cut(s) 23, 185, 206, 296, 308, 327
DdeI CTNAG 2 cut(s) 35, 309
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 36
FaiI YATR 5 cut(s) 62, 114, 123, 201, 234
Fnu4HI GCNGC 2 cut(s) 21, 183
Fsp4HI GCNGC 2 cut(s) 21, 183
FspBI CTAG 2 cut(s) 293, 330
GluI GCNGC 2 cut(s) 21, 183
GsuI CTGGAG 1 cut(s) 134
HinfI GANTC 1 cut(s) 117
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 36, 55
Hpy188III TCNNGA 2 cut(s) 92, 266
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 33, 60, 328, 339
HpyCH4V TGCA 3 cut(s) 20, 27, 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 35, 309
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 3 cut(s) 105, 142, 164
Lsp1109I GCAGC 2 cut(s) 32, 194
MaeI CTAG 2 cut(s) 293, 330
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 257, 381
MnlI CCTC 6 cut(s) 90, 115, 167, 370, 376, 382
MseI TTAA 2 cut(s) 243, 403
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 127
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 22, 184
PspN4I GGNNCC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 243, 403
SatI GCNGC 2 cut(s) 21, 183
Sau3AI GATC 1 cut(s) 3
SetI ASST 9 cut(s) 25, 178, 208, 298, 310, 329, 362, 368, 374
Sse9I AATT 2 cut(s) 257, 381
SspMI CTAG 2 cut(s) 293, 330
TasI AATT 2 cut(s) 257, 381
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 243, 403
Tru9I TTAA 2 cut(s) 243, 403
TseI GCWGC 2 cut(s) 20, 182
TspDTI ATGAA 3 cut(s) 101, 216, 310
XspI CTAG 2 cut(s) 293, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.