Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

2105278 .. 2117462

Gene Structure 12185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGTCATGGACGCAATGGAGGCTAAGAAGGAAAAGTTTCGGAATTGACTTGTATTTGAGAAGGAGATGCCCCTCAGATTGCATATTCGCTCCATATTTTCCACCAAATAATCCTCAAAGATTTGCTTCTGTTCATAGAATCTATGGTGCCAGCAATGTTGGAAGAATGCTCCAGCAACTCCCACCTGATCTTCGAGCTCAAGCTGCAGACACTTTGTATTATGAGGCAGAATGCAGAGTAGAAGATCCTGTGTACGGCTGTGTTGGGGTTATTTCTCGATTACATGAACAAATAGATGAAGCAGAATGTGAATTAGCTAAGACACGAGCTGACATTGTCATTAACTCTGATATTGGACAACAAGCTCAAGTTCAGCAGATTCATGATGAAGTTGAAGACAACTCAAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

138

Amino Acids

15.89

Weight (kDa)

5.15

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	19 - 110	3.4e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	398
AluBI	AGCT	5 cut(s)	200, 206, 320, 332, 368
AluI	AGCT	5 cut(s)	200, 206, 320, 332, 368
Alw21I	GWGCWC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	3 cut(s)	186, 354, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse3DI	GCAATG	2 cut(s)	23, 163
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	2 cut(s)	23, 163
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmI	GAATGC	2 cut(s)	174, 239
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	190, 247
BspCNI	CTCAG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	23, 163
BssMI	GATC	2 cut(s)	190, 247
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	26, 76, 321
BstKTI	GATC	2 cut(s)	193, 250
BstMBI	GATC	2 cut(s)	190, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 206
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	385
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	3 cut(s)	9, 287, 386
CviJI	RGCY	7 cut(s)	25, 200, 206, 261, 320, 332, 368
CviKI_1	RGCY	7 cut(s)	25, 200, 206, 261, 320, 332, 368
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	3 cut(s)	26, 76, 321
DpnI	GATC	2 cut(s)	192, 249
DpnII	GATC	2 cut(s)	190, 247
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	3 cut(s)	12, 290, 389
FaiI	YATR	8 cut(s)	10, 86, 97, 138, 147, 225, 288, 387
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	3 cut(s)	8, 286, 385
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	12, 290, 389
HinfI	GANTC	3 cut(s)	5, 141, 382
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	44, 79, 352
Hpy188III	TCNNGA	2 cut(s)	279, 386
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	24, 57
HpyCH4V	TGCA	3 cut(s)	84, 209, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 206
HpyF3I	CTNAG	3 cut(s)	26, 76, 321
Hsp92II	CATG	3 cut(s)	12, 290, 389
Kzo9I	GATC	2 cut(s)	190, 247
LmnI	GCTCC	2 cut(s)	97, 177
LpnPI	CCDG	4 cut(s)	166, 188, 201, 264
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	59
MalI	GATC	2 cut(s)	192, 249
MboI	GATC	2 cut(s)	190, 247
MboII	GAAGA	4 cut(s)	177, 185, 257, 410
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	45, 314
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	15, 85, 126, 220
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	345, 415
Mva1269I	GAATGC	2 cut(s)	174, 239
MwoI	GCNNNNNNNGC	2 cut(s)	22, 206
NdeII	GATC	2 cut(s)	190, 247
NlaIII	CATG	3 cut(s)	12, 290, 389
NlaIV	GGNNCC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	2 cut(s)	174, 239
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	141, 382
PflFI	GACNNNGTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	345, 415
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	190, 247
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	6 cut(s)	190, 202, 208, 322, 334, 370
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	201, 369, 406
SmoI	CTYRAG	3 cut(s)	201, 369, 406
Sse9I	AATT	2 cut(s)	45, 314
SstI	GAGCTC	1 cut(s)	202
TaqI	TCGA	2 cut(s)	196, 280
TasI	AATT	2 cut(s)	45, 314
TfiI	GAWTC	2 cut(s)	141, 382
Tru1I	TTAA	2 cut(s)	345, 415
Tru9I	TTAA	2 cut(s)	345, 415
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	125, 303, 315, 374, 405
Tth111I	GACNNNGTC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.