Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Forward (+)

28415356 .. 28416570

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCAATTGGGAGCTTCTTCATCGTCGATGTCTTCTTCTGCTGGGTTTGAGATTAGTGCTAGTTCTGCATACCAATTTCCACCAAGTTTGCTTAAGAACAATGGTGATGATCAGCAACAAAATGTTCCAGTGCTGCCACCGCCCGCAGGGAATATTAATGACCAATGTGGTCTGACAAATATGAATGTTGGGGGAGGAAATGTTGAAAATTCCCATAGTGGTGTCATGGATAATACTATTACTACAGATGCTCCTCCTACCTTGATCAACAACAACAATATTTCTCATGAACAAGAATTGGTCGGTGACATTGATGCCTTGATGCTCAGTAATCTGTTTATGGATCAGCAGAACAACTATGAACCTTCTCCTCCTCCTTTTGAGCAACAAGATGGAGATCAAGATCAACTTCCTCCCGACTTTGCTAGTTTCTTATATCAAGTTGAAGTGCCGGACCCTTCTGCCGACCAAGTTCCAAACCCTGACTCTTACCATGTCGAAGATAATGCAGCTAATGAACAATCTTGGAACCAGCAGCAGGAGGGTGGTGATCAACAAGTAGTCAACCCCGAATTCGGTGGCAACGTCTTTGACTCAGAGGACTACAGCATATTATTTGATCCAGAGCACCCTTTTCAGGATTGTGACGATGATTTCTTAAATGCCATATTGGATGCTGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

230

Amino Acids

24.87

Weight (kDa)

4.05

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	143, 147
AclWI	GGATC	2 cut(s)	354, 617
AcsI	RAATTY	2 cut(s)	211, 575
AfiI	CCNNNNNNNGG	4 cut(s)	149, 541, 578, 640
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	209, 449
AluBI	AGCT	2 cut(s)	17, 515
AluI	AGCT	2 cut(s)	17, 515
Alw21I	GWGCWC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	354, 617
ApeKI	GCWGC	3 cut(s)	136, 512, 538
ApoI	RAATTY	2 cut(s)	211, 575
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	3 cut(s)	119, 320, 563
AvaII	GGWCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	123, 524, 550
BccI	CCATC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BclI	TGATCA	3 cut(s)	112, 267, 553
BfaI	CTAG	2 cut(s)	63, 429
BfmI	CTRYAG	2 cut(s)	246, 607
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	137, 513, 539
BlsI	GCNGC	3 cut(s)	138, 514, 540
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	459, 533
BmsI	GCATC	4 cut(s)	241, 307, 315, 667
BpiI	GAAGAC	1 cut(s)	27
BsaBI	GATNNNNATC	2 cut(s)	399, 405
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 238, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 541, 578, 640
Bse1I	ACTGG	1 cut(s)	131
Bse8I	GATNNNNATC	2 cut(s)	399, 405
BseGI	GGATG	1 cut(s)	682
BseJI	GATNNNNATC	2 cut(s)	399, 405
BseLI	CCNNNNNNNGG	4 cut(s)	149, 541, 578, 640
BseMII	CTCAG	2 cut(s)	343, 612
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	246, 363, 366
BseXI	GCAGC	3 cut(s)	123, 524, 550
BseYI	CCCAGC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	4 cut(s)	149, 541, 578, 640
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
BspACI	CCGC	2 cut(s)	143, 147
BspCNI	CTCAG	2 cut(s)	342, 611
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	459, 533
BspPI	GGATC	2 cut(s)	354, 617
BspTI	CTTAAG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	329, 598
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	7 cut(s)	115, 270, 349, 403, 409, 556, 625
BstMBI	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 142
BstSFI	CTRYAG	2 cut(s)	246, 607
BstV1I	GCAGC	3 cut(s)	123, 524, 550
BstV2I	GAAGAC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	682
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	457
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	3 cut(s)	229, 290, 497
CviJI	RGCY	3 cut(s)	5, 17, 515
CviKI_1	RGCY	3 cut(s)	5, 17, 515
DdeI	CTNAG	2 cut(s)	329, 598
DpnI	GATC	7 cut(s)	114, 269, 348, 402, 408, 555, 624
DpnII	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
Eco47I	GGWCC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	575
FaeI	CATG	3 cut(s)	232, 293, 500
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	3 cut(s)	228, 289, 496
FauI	CCCGC	1 cut(s)	154
FbaI	TGATCA	3 cut(s)	112, 267, 553
Fnu4HI	GCNGC	3 cut(s)	137, 513, 539
Fsp4HI	GCNGC	3 cut(s)	137, 513, 539
FspBI	CTAG	2 cut(s)	63, 429
GluI	GCNGC	3 cut(s)	137, 513, 539
GsaI	CCCAGC	1 cut(s)	48
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	3 cut(s)	232, 293, 500
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	2 cut(s)	488, 596
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	3 cut(s)	119, 320, 563
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	2 cut(s)	177, 601
Hpy188III	TCNNGA	5 cut(s)	290, 404, 419, 626, 641
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	378, 471
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	2 cut(s)	71, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 142
HpyF3I	CTNAG	2 cut(s)	329, 598
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	3 cut(s)	232, 293, 500
Ksp22I	TGATCA	3 cut(s)	112, 267, 553
Kzo9I	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
LmnI	GCTCC	2 cut(s)	14, 259
LpnPI	CCDG	9 cut(s)	30, 135, 144, 468, 498, 527, 548, 626, 639
Lsp1109I	GCAGC	3 cut(s)	123, 524, 550
LweI	GCATC	4 cut(s)	241, 307, 315, 667
MaeI	CTAG	2 cut(s)	63, 429
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	308, 647
MalI	GATC	7 cut(s)	114, 269, 348, 402, 408, 555, 624
MboI	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
MboII	GAAGA	4 cut(s)	12, 27, 30, 515
MfeI	CAATTG	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	5 cut(s)	8, 77, 211, 299, 575
MlyI	GAGTC	2 cut(s)	482, 590
MnlI	CCTC	7 cut(s)	191, 267, 384, 387, 426, 538, 595
MseI	TTAA	3 cut(s)	96, 159, 662
MslI	CAYNNNNRTG	1 cut(s)	222
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	68, 142
NdeII	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
NlaIII	CATG	3 cut(s)	232, 293, 500
NlaIV	GGNNCC	2 cut(s)	459, 533
NmuCI	GTSAC	2 cut(s)	308, 647
PagI	TCATGA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	138, 514, 540
PleI	GAGTC	2 cut(s)	482, 590
PpsI	GAGTC	2 cut(s)	482, 590
PshBI	ATTAAT	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	459, 533
PspPI	GGNCC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	96, 159, 662
SatI	GCNGC	3 cut(s)	137, 513, 539
Sau3AI	GATC	7 cut(s)	112, 267, 346, 400, 406, 553, 622
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	482, 590
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	5 cut(s)	19, 266, 370, 517, 591
SfaNI	GCATC	4 cut(s)	241, 307, 315, 667
SfcI	CTRYAG	2 cut(s)	246, 607
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	8, 77, 211, 299, 575
SsiI	CCGC	2 cut(s)	143, 147
SspI	AATATT	2 cut(s)	157, 283
SspMI	CTAG	2 cut(s)	63, 429
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	29, 501
TasI	AATT	5 cut(s)	8, 77, 211, 299, 575
Tru1I	TTAA	3 cut(s)	96, 159, 662
Tru9I	TTAA	3 cut(s)	96, 159, 662
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	308, 647
TseI	GCWGC	3 cut(s)	136, 512, 538
Tsp45I	GTSAC	2 cut(s)	308, 647
TspDTI	ATGAA	5 cut(s)	12, 200, 306, 378, 534
TspRI	CASTG	1 cut(s)	138
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	211, 575
XspI	CTAG	2 cut(s)	63, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.