Rh1DG404800

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001432
Physical Location & Seq
Forward (+)
62399346 .. 62399860
515 bp
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UTR
Exon/CDS
Intron
Rh1DG404800.1

Sequence Viewer

Length: 399 bp
ATGGTTGGTCGTTGTGCTGCTTGCAAGTATTTGAGAAAAGGATGTCCGGAAGATTGCATTTTCGCTCCCTATTTTCCCTCCAACAATCCTCAAAGATTTGAACATGTTCATAGAATCTATGGTGCCAAGAATGTTGCCACCTTGCTTAAGGAATTGGAATCACTGCAACCGTATTTTCGAGCTCAAGCCATTGAAACTCTATGTTATGAGGCTGAAAGTAGAATACAAAATCCTGTGTATGGCTGCGCTGCGATTATTTTCCACTTACAACAGCAAATACATAACATAGAATCTGAATTAGCCAAAATACGTGCTGAGATTGCAGTTCTTAGCTCTAATGGACAAGGACAAGGAGCATCTGAGATGCAGCCGAGTACTGATCAAGTTCATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

5.94

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 104 1.6e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 46
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 2 cut(s) 101, 194
AluBI AGCT 2 cut(s) 182, 333
AluI AGCT 2 cut(s) 182, 333
Alw21I GWGCWC 1 cut(s) 184
Aor13HI TCCGGA 1 cut(s) 46
ApeKI GCWGC 4 cut(s) 17, 243, 248, 367
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 4 cut(s) 4, 230, 235, 379
BclI TGATCA 1 cut(s) 379
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 4 cut(s) 18, 244, 249, 368
BlsI GCNGC 4 cut(s) 19, 245, 250, 369
BmcAI AGTACT 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 2 cut(s) 354, 365
BpuEI CTTGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 46
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 306, 351
BseXI GCAGC 4 cut(s) 4, 230, 235, 379
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 307, 352
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 146
BssMI GATC 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 315, 329, 360
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 4, 230, 235, 379
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 104, 389
CviJI RGCY 7 cut(s) 182, 188, 212, 243, 302, 333, 370
CviKI_1 RGCY 7 cut(s) 182, 188, 212, 243, 302, 333, 370
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 315, 329, 360
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 2 cut(s) 107, 392
FaiI YATR 9 cut(s) 105, 111, 120, 202, 207, 240, 282, 287, 390
FatI CATG 2 cut(s) 103, 388
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 18, 244, 249, 368
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 18, 244, 249, 368
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 18, 244, 249, 368
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 107, 392
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 3 cut(s) 114, 158, 290
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 295, 361
Hpy188III TCNNGA 2 cut(s) 47, 389
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 24, 57, 166, 323, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 315, 329, 360
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 2 cut(s) 107, 392
HspAI GCGC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 2 cut(s) 70, 353
LpnPI CCDG 2 cut(s) 60, 246
Lsp1109I GCAGC 4 cut(s) 4, 230, 235, 379
LweI GCATC 2 cut(s) 354, 365
MaeII ACGT 1 cut(s) 310
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 2 cut(s) 152, 296
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 88, 99, 202, 385
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 107, 392
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 396
NspI RCATGY 1 cut(s) 107
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 114, 158, 290
PkrI GCNGC 4 cut(s) 19, 245, 250, 369
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 124
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 18, 244, 249, 368
Sau3AI GATC 1 cut(s) 379
ScaI AGTACT 1 cut(s) 376
SduI GDGCHC 1 cut(s) 184
SetI ASST 4 cut(s) 143, 184, 313, 335
SfaNI GCATC 2 cut(s) 354, 365
SmlI CTYRAG 2 cut(s) 146, 183
SmoI CTYRAG 2 cut(s) 146, 183
Sse9I AATT 2 cut(s) 152, 296
SstI GAGCTC 1 cut(s) 184
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 152, 296
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 3 cut(s) 114, 158, 290
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 168
TseI GCWGC 4 cut(s) 17, 243, 248, 367
TspDTI ATGAA 2 cut(s) 98, 377
TspRI CASTG 1 cut(s) 168
Vha464I CTTAAG 1 cut(s) 146
XceI RCATGY 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.